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Gene Symbol
PUSL1
Assay Reference Genome
Location

Chr.1:1311061 on build GRCh38
Cytoband
1p36.33
Assay ID Hs01420732_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 126789

Gene Name:

 pseudouridylate synthase-like 1

Gene Aliases:

 -

Location:

 Chr.1:1308562-1311677 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 8 - Intron 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PUSL1 NM_153339.1 NP_699170.1
AK027721.1
AK075292.1 BAC11527.1
AK298218.1
BC034304.1 AAH34304.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss TMEM240 TAS1R3 FAAP20 MIR200B KLHL17 ISG15 SLC35E2 SCNN1D WASH7P LOC100506504 GNB1 TMEM88B LOC100133331 HES4 B3GALT6 LOC100130417 LOC100129534 VWA1 MIB2 MMP23A LOC729737 CCNL2 MIR6859-2 LOC100132287 MIR6726 LOC102724312 DVL1 NOC2L MIR200A LOC107984841 LOC105378948 LINC00115 AURKAIP1 MIR6723 C1orf159 LOC105378592 DDX11L1 OR4F5 TNFRSF18 ANKRD65 SAMD11 SSU72 TMEM52 FAM41C PLEKHN1 UBE2J2 MIR429 LOC148413 LOC100288069 CPTP OR4F29 PERM1 FAM138A LINC01342 RNF223 FAM132A CDK11A TTLL10 AGRN MMP23B MTND2P28 SDF4 FNDC10 OR4F16 MIR1302-2 NADK ATAD3B SLC35E2B MTND1P23 PUSL1 CDK11B PRKCZ MRPL20 LOC100287934 GABRD LOC107985728 LOC107985729 FAM87B MIR6808 MXRA8 MORN1 LINC01128 LOC105378591 LOC101928626 LOC105378949 SKI TTLL10-AS1 LOC105378947 ATAD3C ACAP3 TNFRSF4 CALML6 MIR6859-1 LOC284600 LOC102725121 ATAD3A LOC100288175 MIR6727 LOC105378589 CPSF3L LOC100134822 CFAP74
nsv544971 Chr.1:1294063 - 1351426 on Build GRCh38 Loss TAS1R3 ACAP3 MIR6808 DVL1 CPSF3L PUSL1 CPTP MIR6727 MIR6726
nsv544969 Chr.1:1290683 - 1374597 on Build GRCh38 Loss AURKAIP1 TAS1R3 ACAP3 MIR6808 DVL1 MXRA8 CPSF3L PUSL1 CPTP MIR6727 SCNN1D MIR6726
dgv7n100 Chr.1:1306835 - 1379057 on Build GRCh38 Loss AURKAIP1 TAS1R3 ACAP3 MIR6808 DVL1 MXRA8 CPSF3L PUSL1 CPTP MIR6727
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss AURKAIP1 TAS1R3 MIR6808 MXRA8 C1orf159 FAM132A MIR200B TTLL10 TTLL10-AS1 SCNN1D ACAP3 TNFRSF4 TNFRSF18 SDF4 B3GALT6 UBE2J2 MIR429 PUSL1 CPTP MIR6727 MIR6726 DVL1 CPSF3L MIR200A LINC01342 RNF223
dgv6n100 Chr.1:1301750 - 1362354 on Build GRCh38 Gain+Loss TAS1R3 ACAP3 MIR6808 DVL1 MXRA8 CPSF3L PUSL1 CPTP MIR6727
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication TAS1R3 C1orf159 FAM132A MIR200B TTLL10 TTLL10-AS1 SCNN1D AGRN ACAP3 TNFRSF4 TNFRSF18 SDF4 B3GALT6 UBE2J2 MIR429 PUSL1 CPTP LOC100288175 MIR6727 MIR6726 CPSF3L MIR200A LINC01342 RNF223 LOC105378948
nsv1160788 Chr.1:1282706 - 1376336 on Build GRCh38 Deletion AURKAIP1 TAS1R3 ACAP3 MIR6808 DVL1 MXRA8 CPSF3L PUSL1 CPTP MIR6727 SCNN1D MIR6726
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss TMEM240 TAS1R3 FAM132A MIR200B KLHL17 CDK11A TTLL10 ISG15 SLC35E2 SCNN1D AGRN MMP23B TMEM88B SDF4 FNDC10 HES4 B3GALT6 LOC100130417 NADK ATAD3B SLC35E2B VWA1 MIB2 MMP23A PUSL1 CCNL2 CDK11B MIR6726 LOC102724312 DVL1 MRPL20 LOC100287934 NOC2L LOC107985728 MIR200A LOC107985729 LOC105378948 LINC00115 FAM87B AURKAIP1 MIR6808 MXRA8 LINC01128 C1orf159 TTLL10-AS1 ATAD3C ACAP3 TNFRSF4 TNFRSF18 ANKRD65 SAMD11 LOC284600 SSU72 FAM41C PLEKHN1 UBE2J2 ATAD3A MIR429 LOC148413 LOC100288069 CPTP LOC100288175 MIR6727 PERM1 CPSF3L LINC01342 RNF223
esv3890636 Chr.1:1304555 - 1353203 on Build GRCh38 Loss TAS1R3 ACAP3 MIR6808 DVL1 MXRA8 CPSF3L PUSL1 CPTP MIR6727
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion AURKAIP1 TMEM240 TAS1R3 MIR6808 MXRA8 C1orf159 FAM132A MIR200B TTLL10 TTLL10-AS1 SCNN1D ATAD3C MMP23B ACAP3 TNFRSF4 TNFRSF18 ANKRD65 TMEM88B SDF4 FNDC10 SSU72 B3GALT6 ATAD3B UBE2J2 ATAD3A VWA1 MIR429 LOC148413 MIB2 PUSL1 CPTP CCNL2 MIR6727 CDK11B MIR6726 LOC102724312 DVL1 MRPL20 CPSF3L MIR200A LINC01342 LOC107985729
nsv1000169 Chr.1:1281678 - 1362354 on Build GRCh38 Gain TAS1R3 ACAP3 MIR6808 DVL1 MXRA8 CPSF3L PUSL1 CPTP MIR6727 SCNN1D MIR6726
esv2758912 Chr.1:1263940 - 1384492 on Build GRCh38 Loss AURKAIP1 TAS1R3 UBE2J2 MIR6808 MXRA8 PUSL1 CPTP MIR6727 SCNN1D MIR6726 ACAP3 DVL1 CPSF3L
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain AURKAIP1 TAS1R3 MIR6808 MXRA8 C1orf159 FAM132A MIR200B KLHL17 TTLL10 ISG15 TTLL10-AS1 SCNN1D AGRN ACAP3 TNFRSF4 TNFRSF18 ANKRD65 TMEM88B SDF4 SAMD11 LOC284600 HES4 PLEKHN1 B3GALT6 LOC100130417 UBE2J2 MIR429 LOC148413 PUSL1 CPTP CCNL2 LOC100288175 MIR6727 MIR6726 PERM1 DVL1 MRPL20 CPSF3L NOC2L LOC107985728 MIR200A LINC01342 RNF223 LOC105378948
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain UBE2J2 MIR429 FAM132A MIR200B PUSL1 MIR6727 TTLL10 TTLL10-AS1 SCNN1D MIR6726 ACAP3 TNFRSF4 TNFRSF18 SDF4 CPSF3L MIR200A B3GALT6

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More Information


Additional Information:

For this assay, SNP(s) [rs115163464] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

lyase

Gene Ontology Categories:

Function(s) Process(es)


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