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See other TNFRSF18 CNV Assays ›
Gene Symbol
TNFRSF18
Assay Reference Genome
Location

Chr.1:1204090 on build GRCh38
Cytoband
1p36.33
Assay ID Hs01421882_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 8784

Gene Name:

 TNF receptor superfamily member 18

Gene Aliases:

 AITR, CD357, GITR, GITR-D

Location:

 Chr.1:1203508-1207900 on Build GRCh38

Assay Gene Location:

 Within Exon 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TNFRSF18 NM_004195.2 4 683 NP_004186.1
NM_148901.1 NP_683699.1
NM_148902.1 NP_683700.1
XM_017002722.1 4 1874 XP_016858211.1
AF117297.1 AAD19694.1
AF125304.1 4 545 AAD22635.1
AF241229.1 AAF63506.1
AY358877.1 4 665 AAQ89236.1
BC152381.1 4 548
BC152386.1 4 548
BT019531.1 4 545 AAV38338.1
BT019532.1 4 545 AAV38339.1
KP067911.1 4 683

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC105378949 ANKRD65 LOC105378948 SLC35E2 LOC107985729 PLEKHN1 FAAP20 TMEM88B TAS1R3 MIB2 MTND1P23 ATAD3A MIR6726 LOC105378591 LOC102725121 LOC105378947 LOC100130417 MRPL20 LOC100129534 OR4F5 MIR6808 KLHL17 PERM1 DVL1 AURKAIP1 LOC284600 FAM41C SKI TNFRSF4 LOC100134822 LOC105378592 CDK11A FAM87B SLC35E2B LINC01342 CALML6 TTLL10-AS1 ISG15 TMEM240 SAMD11 GABRD NADK CDK11B MMP23B RNF223 FNDC10 MIR200B LINC01128 DDX11L1 ACAP3 TTLL10 MIR6723 LOC107985728 MIR429 FAM132A TNFRSF18 LOC100133331 MORN1 LOC100288069 LOC105378589 PUSL1 LOC101928626 FAM138A MMP23A MXRA8 WASH7P CCNL2 SDF4 LOC148413 MIR6859-1 CFAP74 MIR6727 VWA1 MIR6859-2 HES4 OR4F29 MTND2P28 PRKCZ LINC00115 UBE2J2 NOC2L LOC100506504 OR4F16 LOC100132287 ATAD3C B3GALT6 ATAD3B LOC102724312 AGRN LOC729737 MIR200A SCNN1D C1orf159 CPSF3L LOC100287934 MIR1302-2 LOC107984841 GNB1 CPTP TMEM52 LOC100288175 SSU72
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain TTLL10-AS1 SDF4 LOC105378948 MIR429 TNFRSF4 RNF223 FAM132A MIR200A TNFRSF18 MIR200B SCNN1D C1orf159 TTLL10 UBE2J2 B3GALT6 LINC01342
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss TTLL10-AS1 SDF4 MIR429 TNFRSF4 RNF223 FAM132A MIR200A TNFRSF18 MIR200B ACAP3 SCNN1D C1orf159 MIR6726 TTLL10 UBE2J2 B3GALT6 LINC01342
nsv544960 Chr.1:1204036 - 1207482 on Build GRCh38 Loss TNFRSF18
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10-AS1 TNFRSF18 SDF4 TNFRSF4 TTLL10 B3GALT6
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain NOC2L LOC284600 LOC107985728 FAM41C LOC105378948 MIR429 TNFRSF4 PLEKHN1 TNFRSF18 LINC01342 TTLL10-AS1 ISG15 SDF4 SAMD11 AGRN HES4 RNF223 LOC100130417 MIR200A MIR200B C1orf159 TTLL10 KLHL17 PERM1 LOC100288175
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication LOC105378948 MIR429 TNFRSF4 FAM132A TNFRSF18 TAS1R3 MIR6726 PUSL1 B3GALT6 LINC01342 TTLL10-AS1 SDF4 MIR6727 AGRN RNF223 MIR200A MIR200B ACAP3 SCNN1D C1orf159 CPSF3L TTLL10 UBE2J2 CPTP LOC100288175
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC107985728 ANKRD65 LOC105378948 MIR429 SLC35E2 LOC107985729 PLEKHN1 FAM132A TNFRSF18 TMEM88B TAS1R3 MIB2 LOC100288069 ATAD3A MIR6726 PUSL1 MMP23A MXRA8 CCNL2 SDF4 LOC148413 MIR6727 VWA1 HES4 LOC100130417 MRPL20 MIR6808 LINC00115 KLHL17 UBE2J2 PERM1 DVL1 AURKAIP1 NOC2L LOC284600 FAM41C TNFRSF4 CDK11A FAM87B ATAD3C B3GALT6 SLC35E2B LINC01342 TTLL10-AS1 ISG15 TMEM240 ATAD3B SAMD11 LOC102724312 NADK AGRN CDK11B MMP23B RNF223 MIR200A FNDC10 MIR200B LINC01128 ACAP3 SCNN1D C1orf159 CPSF3L LOC100287934 TTLL10 CPTP LOC100288175 SSU72
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss NOC2L LOC284600 LOC107985728 FAM41C LOC105378948 MIR429 TNFRSF4 PLEKHN1 FAM132A TNFRSF18 FAM87B B3GALT6 LINC01342 TTLL10-AS1 ISG15 SDF4 SAMD11 AGRN HES4 RNF223 LOC100130417 MIR200A MIR200B LINC01128 C1orf159 LINC00115 TTLL10 KLHL17 UBE2J2 PERM1 LOC100288175
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion ANKRD65 MIR429 TNFRSF4 LOC107985729 FAM132A TNFRSF18 TMEM88B TAS1R3 MIB2 ATAD3A MIR6726 PUSL1 ATAD3C B3GALT6 LINC01342 MXRA8 CCNL2 TTLL10-AS1 SDF4 TMEM240 ATAD3B LOC148413 MIR6727 LOC102724312 VWA1 CDK11B MMP23B MRPL20 MIR200A FNDC10 MIR200B ACAP3 SCNN1D C1orf159 MIR6808 CPSF3L TTLL10 UBE2J2 CPTP DVL1 SSU72 AURKAIP1
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain NOC2L LOC284600 LOC107985728 ANKRD65 LOC105378948 MIR429 TNFRSF4 PLEKHN1 FAM132A TNFRSF18 TMEM88B TAS1R3 MIR6726 PUSL1 B3GALT6 LINC01342 MXRA8 CCNL2 TTLL10-AS1 ISG15 SDF4 LOC148413 SAMD11 MIR6727 AGRN HES4 RNF223 LOC100130417 MRPL20 MIR200A MIR200B ACAP3 SCNN1D C1orf159 MIR6808 CPSF3L TTLL10 KLHL17 UBE2J2 CPTP PERM1 LOC100288175 DVL1 AURKAIP1
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion TTLL10-AS1 ISG15 NOC2L SDF4 SAMD11 LOC105378948 AGRN MIR429 HES4 TNFRSF4 RNF223 PLEKHN1 MIR200A TNFRSF18 MIR200B C1orf159 TTLL10 KLHL17 PERM1 LOC100288175 LINC01342
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain TTLL10-AS1 SDF4 MIR6727 MIR429 TNFRSF4 FAM132A MIR200A TNFRSF18 MIR200B ACAP3 SCNN1D MIR6726 CPSF3L PUSL1 TTLL10 UBE2J2 B3GALT6

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