Hs01440096_cn

• Gene Symbol: TRAPPC2L
• Assay Reference Genome Location: Chr.16:88861108 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 51693
• Gene Name: trafficking protein particle complex 2-like
• Gene Aliases: HSPC176
• Location: Chr.16:88856220-88862686 on Build GRCh38
• Assay Gene Location: Within Exon 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TRAPPC2L	NM_001318524.1	5	655	NP_001305453.1
	NM_001318525.1	5	634	NP_001305454.1
	NM_001318526.1	5	699	NP_001305455.1
	NM_001318527.1	5	971	NP_001305456.1
	NM_001318528.1	5	614	NP_001305457.1
	NM_001318529.1	5	953	NP_001305458.1
	NM_001318530.1	5	611	NP_001305459.1
	NM_001318532.1	5	950	NP_001305461.1
	NM_016209.4	5	637	NP_057293.1
	NR_134670.1	6	821
	NR_134671.1	6	753
	XM_017023270.1	5	681	XP_016878759.1
	AF089106.1			AAF00568.1
	AF161524.1			AAF29139.1
	AK126779.1	4	1534	BAC86686.1
	AK307253.1	6	753
	AK310805.1	5	905
	AX771012.1			CAE01175.1
	AX771013.1			CAE01176.1
	AX771014.1			CAE01177.1
	BC011369.1	5	581	AAH11369.1
	BC018024.1			AAH18024.1
	BC105809.1			AAI05810.1
	BI754306.1	6	763
	BX340702.2
	BX384775.2	5	907
	BX419849.2	5	600
	DA295904.1
	DA833474.1	5	573

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv37n68	Chr.16:88767460 - 88944903 on Build GRCh38	Loss	CBFA2T3 PIEZO1 CDT1 TRAPPC2L LOC101927793 GALNS LOC105371409 LOC100129697 PABPN1L LOC107987238 APRT
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	CBFA2T3 CTU2 LOC400558 LOC100289580 TRAPPC2L CDH15 LOC101927793 GALNS LOC339059 ZNF778 PABPN1L SLC22A31 PIEZO1 CDT1 MIR4722 LINC00304 ACSF3 LOC105371409 LOC100129697 LOC107987238 APRT
nsv471115	Chr.16:88801844 - 89197442 on Build GRCh38	Loss	CBFA2T3 LOC400558 TRAPPC2L CDH15 LOC101927793 GALNS PABPN1L SLC22A31 CDT1 LINC00304 ACSF3 LOC105371409 LOC100129697 LOC107987238 APRT
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	CBFA2T3 LOC400558 LOC100289580 TRAPPC2L CDH15 LOC101927793 GALNS LOC339059 ZNF778 PABPN1L SLC22A31 PIEZO1 CDT1 LINC00304 LOC100287036 ANKRD11 ACSF3 LOC105371414 LOC105371409 LOC100129697 LOC107987238 APRT
esv3639555	Chr.16:88745961 - 88899576 on Build GRCh38	Gain	CBFA2T3 PIEZO1 CDT1 TRAPPC2L LOC101927793 GALNS PABPN1L LOC107987238 APRT
nsv952071	Chr.16:88790893 - 89019992 on Build GRCh38	Deletion	CBFA2T3 CDT1 TRAPPC2L LOC101927793 GALNS LOC105371409 LOC100129697 PABPN1L LOC107987238 APRT
nsv521217	Chr.16:88805821 - 89174375 on Build GRCh38	Loss	CBFA2T3 LOC400558 TRAPPC2L CDH15 LOC101927793 GALNS PABPN1L CDT1 LINC00304 ACSF3 LOC105371409 LOC100129697 LOC107987238 APRT
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	LOC100289580 DBNDD1 FAM157C TRAPPC2L SPIRE2 PABPN1L MC1R PIEZO1 SPATA2L RPL13 SNAI3 SPG7 SNAI3-AS1 LOC107987238 GAS8-AS1 RNF166 CENPBD1 ZNF778 SLC22A31 CHMP1A IL17C LINC00304 PRDM7 ANKRD11 DEF8 LOC107984817 CBFA2T3 CTU2 LOC400558 TUBB3 ZNF276 LOC101927793 LOC101927817 AFG3L1P GALNS LOC105371419 SPATA33 VPS9D1 LOC339059 CYBA CDT1 TUBB8P7 LOC100287036 TCF25 DPEP1 LOC105371414 SNORD68 LOC105371409 LOC100129697 APRT URAHP CDK10 FANCA CDH15 CPNE7 MIR4722 ACSF3 MVD VPS9D1-AS1 GAS8
esv3639561	Chr.16:88837996 - 88882065 on Build GRCh38	Gain	CBFA2T3 TRAPPC2L GALNS PABPN1L
nsv1061256	Chr.16:88711587 - 89013365 on Build GRCh38	Gain	CBFA2T3 CTU2 LOC100289580 TRAPPC2L LOC101927793 GALNS LOC339059 PABPN1L PIEZO1 CDT1 MIR4722 LOC105371409 LOC100129697 LOC107987238 APRT
nsv1063441	Chr.16:88767066 - 88861882 on Build GRCh38	Loss	PIEZO1 CDT1 TRAPPC2L GALNS LOC107987238 APRT

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

membrane traffic protein