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See other TRAPPC2L CNV Assays ›
Gene Symbol
TRAPPC2L
Assay Reference Genome
Location

Chr.16:88861108 on build GRCh38
Cytoband
16q24.3
Assay ID Hs01440096_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 51693

Gene Name:

 trafficking protein particle complex 2-like

Gene Aliases:

 HSPC176

Location:

 Chr.16:88856220-88862686 on Build GRCh38

Assay Gene Location:

 Within Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRAPPC2L NM_001318524.1 5 655 NP_001305453.1
NM_001318525.1 5 634 NP_001305454.1
NM_001318526.1 5 699 NP_001305455.1
NM_001318527.1 5 971 NP_001305456.1
NM_001318528.1 5 614 NP_001305457.1
NM_001318529.1 5 953 NP_001305458.1
NM_001318530.1 5 611 NP_001305459.1
NM_001318532.1 5 950 NP_001305461.1
NM_016209.4 5 637 NP_057293.1
NR_134670.1 6 821
NR_134671.1 6 753
XM_017023270.1 5 681 XP_016878759.1
AF089106.1 AAF00568.1
AF161524.1 AAF29139.1
AK126779.1 4 1534 BAC86686.1
AK307253.1 6 753
AK310805.1 5 905
AX771012.1 CAE01175.1
AX771013.1 CAE01176.1
AX771014.1 CAE01177.1
BC011369.1 5 581 AAH11369.1
BC018024.1 AAH18024.1
BC105809.1 AAI05810.1
BI754306.1 6 763
BX340702.2
BX384775.2 5 907
BX419849.2 5 600
DA295904.1
DA833474.1 5 573

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv37n68 Chr.16:88767460 - 88944903 on Build GRCh38 Loss LOC101927793 LOC100129697 CDT1 PIEZO1 APRT LOC105371409 TRAPPC2L PABPN1L CBFA2T3 LOC107987238 GALNS
nsv1063024 Chr.16:88707330 - 89238482 on Build GRCh38 Gain LOC101927793 LOC100129697 MIR4722 CDT1 APRT LOC100289580 LOC105371409 LINC00304 CDH15 LOC339059 PABPN1L CBFA2T3 LOC107987238 SLC22A31 GALNS CTU2 PIEZO1 ACSF3 LOC400558 TRAPPC2L ZNF778
nsv471115 Chr.16:88801844 - 89197442 on Build GRCh38 Loss LOC101927793 LOC100129697 CDT1 APRT LOC105371409 LINC00304 CDH15 PABPN1L CBFA2T3 LOC107987238 SLC22A31 GALNS ACSF3 LOC400558 TRAPPC2L
nsv573674 Chr.16:88738775 - 89325907 on Build GRCh38 Gain LOC101927793 LOC100129697 CDT1 APRT LOC105371414 LOC100289580 LOC105371409 ANKRD11 LINC00304 CDH15 LOC339059 PABPN1L CBFA2T3 LOC107987238 SLC22A31 GALNS PIEZO1 ACSF3 LOC100287036 LOC400558 TRAPPC2L ZNF778
esv3639555 Chr.16:88745961 - 88899576 on Build GRCh38 Gain LOC101927793 CDT1 PIEZO1 APRT TRAPPC2L PABPN1L CBFA2T3 LOC107987238 GALNS
nsv521217 Chr.16:88805821 - 89174375 on Build GRCh38 Loss LOC101927793 LOC100129697 CDT1 APRT LOC105371409 LINC00304 CDH15 PABPN1L CBFA2T3 LOC107987238 GALNS ACSF3 LOC400558 TRAPPC2L
nsv952071 Chr.16:88790893 - 89019992 on Build GRCh38 Deletion LOC101927793 LOC100129697 CDT1 APRT LOC105371409 TRAPPC2L PABPN1L CBFA2T3 LOC107987238 GALNS
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss DBNDD1 SNAI3 DPEP1 CDT1 CHMP1A LINC00304 CDH15 LOC107984817 SPATA2L RPL13 VPS9D1-AS1 GAS8-AS1 SNORD68 TCF25 SPG7 MIR4722 TUBB3 LOC105371414 URAHP CYBA LOC339059 PABPN1L SLC22A31 CTU2 CENPBD1 ZNF276 LOC400558 IL17C RNF166 TUBB8P7 APRT AFG3L1P LOC105371419 FAM157C CBFA2T3 LOC107987238 GALNS PIEZO1 MVD LOC100287036 TRAPPC2L CPNE7 LOC101927793 LOC100129697 DEF8 LOC100289580 LOC105371409 CDK10 ANKRD11 SPIRE2 FANCA PRDM7 MC1R LOC101927817 SPATA33 ACSF3 GAS8 ZNF778 VPS9D1 SNAI3-AS1
esv3639561 Chr.16:88837996 - 88882065 on Build GRCh38 Gain TRAPPC2L PABPN1L CBFA2T3 GALNS
nsv1063441 Chr.16:88767066 - 88861882 on Build GRCh38 Loss CDT1 PIEZO1 APRT TRAPPC2L LOC107987238 GALNS
dgv3065n100 Chr.16:88711587 - 88927172 on Build GRCh38 Gain LOC101927793 MIR4722 CDT1 APRT LOC100289580 LOC339059 PABPN1L CBFA2T3 LOC107987238 GALNS CTU2 PIEZO1 TRAPPC2L

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

membrane traffic protein

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