Hs01442709_cn

• Gene Symbol: NUBP2
• Assay Reference Genome Location: Chr.16:1786912 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 10101
• Gene Name: nucleotide binding protein 2
• Gene Aliases: CFD1, NBP 2, NUBP1
• Location: Chr.16:1782923-1789191 on Build GRCh38
• Assay Gene Location: Overlaps Exon 6 - Intron 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NUBP2	NM_001284501.1			NP_001271430.1
	NM_001284502.1			NP_001271431.1
	NM_012225.3			NP_036357.1
	NR_104318.1
	XM_005255027.2			XP_005255084.1
	XM_005255030.1			XP_005255087.1
	XM_011522338.2			XP_011520640.1
	XM_017022831.1			XP_016878320.1
	XM_017022832.1			XP_016878321.1
	AF118394.1			AAD45242.1
	AK001023.1			BAA91471.1
	AK093593.1	2	481
	AK124460.1
	AK300696.1
	AK315611.1
	BC002768.2			AAH02768.1
	BC008005.1			AAH08005.1
	BI196883.1
	BU189242.1
	BX446436.2
	BX648907.1	2	436

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv571169	Chr.16:1729694 - 1789022 on Build GRCh38	Loss	NUBP2 MAPK8IP3 NME3 EME2 SPSB3 MRPS34 MIR3177
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	SLC9A3R2 MIR3178 SNORA10 RPL23AP5 NME4 UNKL WASIR2 NTHL1 ATP6V0C MIR6859-4 RNPS1 ARHGDIG IGFALS MIR4717 PRSS27 AMDHD2 TMEM8A CLCN7 TSR3 GNG13 TMEM204 MAPK8IP3 BRICD5 SNORA78 LOC107984876 TBL3 MIR3180-5 UBE2I LOC100287175 TRAF7 PIGQ GNPTG IFT140 PRR35 ERVK13-1 FAM173A RPL3L RPUSD1 HBZ PTX4 DDX11L10 LOC105371047 MIR3677 DECR2 TPSD1 MIR6511B1 SSTR5 ZNF598 BAIAP3 ECI1 LOC652276 LINC00235 MRPL28 DNASE1L2 LOC105371046 FAM234A SOX8 MLST8 MEIOB MIR3177 RAB11FIP3 RHOT2 PRSS29P HAGH NOXO1 HAGHL RNF151 TSC2 CCDC154 LOC105371045 HN1L CACNA1H SNHG19 SPSB3 RPS2 PDPK1 TELO2 PGP ABCA3 MIR940 SSTR5-AS1 NDUFB10 NPW NARFL LOC100134368 MIR6768 MSRB1 NHLRC4 AXIN1 WDR90 RAB40C HBM RGS11 LOC105371038 MIR5587 RAB26 NME3 CEMP1 MIR662 FLJ42627 CHTF18 CRAMP1 HBQ1 KCTD5 LOC107987233 LOC105371184 PKD1 MPG STUB1 PRR25 LOC106660606 MCRIP2 FBXL16 C16orf91 NPRL3 GFER TPSG1 MRPS34 MSLN SYNGR3 SNHG9 ABCA17P LOC105371049 MIR4516 MIR1225 HBA2 CCNF MIR3176 WFIKKN1 PDIA2 RHBDF1 NTN3 LOC101929280 CASKIN1 FAHD1 EME2 RHBDL1 LMF1-AS1 LUC7L SNRNP25 TPSB2 NUBP2 C16orf59 LOC729652 LMF1 LINC00254 HS3ST6 SNORD60 E4F1 CCDC78 WDR24 TPSAB1 JMJD8 POLR3K TBC1D24 HBA1 METRN CAPN15 METTL26 C1QTNF8 MIR6767 SNORA64
nsv571172	Chr.16:1764390 - 1817039 on Build GRCh38	Loss	NUBP2 HAGH MAPK8IP3 IGFALS NME3 EME2 SPSB3 MRPS34
nsv1160328	Chr.16:1704619 - 1797867 on Build GRCh38	Deletion	NUBP2 MAPK8IP3 IGFALS NME3 EME2 SPSB3 MRPS34 MIR3177
nsv571171	Chr.16:1757779 - 1804539 on Build GRCh38	Gain+Loss	NUBP2 MAPK8IP3 IGFALS NME3 EME2 SPSB3 MRPS34
nsv1042986	Chr.16:1784723 - 1866102 on Build GRCh38	Loss	NUBP2 HAGH FAHD1 IGFALS MEIOB
dgv4856n54	Chr.16:1600945 - 1813519 on Build GRCh38	Loss	CRAMP1 NUBP2 MAPK8IP3 HAGH LOC105371046 IFT140 IGFALS NME3 HN1L EME2 SPSB3 MRPS34 MIR3177
nsv471069	Chr.16:1754356 - 1791032 on Build GRCh38	Loss	NUBP2 MAPK8IP3 IGFALS NME3 EME2 SPSB3 MRPS34
nsv1051692	Chr.16:1505070 - 1866102 on Build GRCh38	Loss	CRAMP1 TELO2 NUBP2 LOC105371047 TMEM204 MAPK8IP3 HAGH LOC105371046 FAHD1 IFT140 IGFALS NME3 HN1L EME2 SPSB3 MRPS34 MEIOB MIR3177
nsv827500	Chr.16:1761258 - 1795126 on Build GRCh38	Gain	NUBP2 MAPK8IP3 IGFALS NME3 EME2 SPSB3 MRPS34
nsv518641	Chr.16:1645775 - 1835631 on Build GRCh38	Loss	CRAMP1 NUBP2 MAPK8IP3 HAGH FAHD1 IGFALS NME3 HN1L EME2 SPSB3 MRPS34 MEIOB MIR3177
nsv457336	Chr.16:1752231 - 1791032 on Build GRCh38	Loss	NUBP2 MAPK8IP3 IGFALS NME3 EME2 SPSB3 MRPS34
nsv952900	Chr.16:1724500 - 1827999 on Build GRCh38	Deletion	NUBP2 HAGH MAPK8IP3 FAHD1 IGFALS NME3 EME2 SPSB3 MRPS34 MIR3177

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

iron-sulfur cluster assembly
cell projection organization

Function(s)

nucleotide binding
protein binding
ATP binding
metal ion binding
4 iron, 4 sulfur cluster binding