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See other CPSF3L CNV Assays ›
Gene Symbol
CPSF3L
Assay Reference Genome
Location

Chr.1:1311637 on build GRCh38
Cytoband
1p36.33
Assay ID Hs01444701_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 54973

Gene Name:

 cleavage and polyadenylation specific factor 3-like

Gene Aliases:

 CPSF73L, INT11, INTS11, RC-68, RC68

Location:

 Chr.1:1311585-1324687 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 19
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CPSF3L NM_001256456.1 NP_001243385.1
NM_001256460.1 NP_001243389.1
NM_001256462.1 NP_001243391.1
NM_001256463.1 NP_001243392.1
NM_017871.5 NP_060341.2
XM_011541647.1 XP_011539949.1
XM_011541648.1 XP_011539950.1
XM_011541650.1 XP_011539952.1
XM_017001557.1 XP_016857046.1
XM_017001558.1 XP_016857047.1
AA687684.1
AK000549.1 BAA91246.1
AK021939.1 BAB13943.1
AK023356.1 BAB14541.1
AK056652.1
AK058018.1
AK092190.1
AK123641.1
AK291387.1
AL136813.1 CAB66747.1
BC000675.2 AAH00675.2
BC007978.2 AAH07978.1
BC008041.2 AAH08041.1
BC013904.2 AAH13904.2
BC020199.1 AAH20199.1
KF274554.1

Target Gene Details

Entrez Gene ID:

 126789

Gene Name:

 pseudouridylate synthase-like 1

Gene Aliases:

 -

Location:

 Chr.1:1308562-1311677 on Build GRCh38

Assay Gene Location:

 Within Exon 9
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PUSL1 NM_153339.1 8 1200 NP_699170.1
AK027721.1 4 2045
AK075292.1 8 1217 BAC11527.1
AK298218.1 7 1110
BC034304.1 8 1200 AAH34304.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss OR4F5 LOC100287934 OR4F16 DVL1 LOC105378591 AGRN TTLL10-AS1 LOC102725121 TMEM240 LOC100132287 ACAP3 LOC101928626 SCNN1D CFAP74 LOC105378949 LINC00115 OR4F29 SSU72 MIR200B MIR6808 LOC148413 LINC01342 MORN1 TTLL10 KLHL17 MIR200A AURKAIP1 FAM138A SAMD11 LOC107985729 SKI CPSF3L TAS1R3 LOC100506504 MIR1302-2 CALML6 SLC35E2 LOC105378592 PERM1 CDK11A LINC01128 LOC100288069 FAM132A FAM41C LOC107985728 MXRA8 ATAD3A TNFRSF18 HES4 DDX11L1 LOC105378948 TNFRSF4 UBE2J2 MTND2P28 TMEM52 LOC729737 GABRD GNB1 SDF4 ATAD3C MMP23B MMP23A ANKRD65 PRKCZ NOC2L LOC100133331 FAAP20 LOC100129534 LOC105378947 FAM87B MIR429 WASH7P PLEKHN1 MIR6859-1 MIR6726 B3GALT6 SLC35E2B LOC105378589 NADK FNDC10 MTND1P23 LOC102724312 MIR6859-2 CDK11B MRPL20 PUSL1 VWA1 ATAD3B CCNL2 TMEM88B LOC107984841 LOC100134822 LOC100130417 CPTP C1orf159 LOC284600 RNF223 MIB2 MIR6727 MIR6723 ISG15 LOC100288175
nsv544971 Chr.1:1294063 - 1351426 on Build GRCh38 Loss TAS1R3 MIR6727 ACAP3 DVL1 MIR6726 CPTP CPSF3L PUSL1 MIR6808
nsv544969 Chr.1:1290683 - 1374597 on Build GRCh38 Loss TAS1R3 MIR6727 MXRA8 AURKAIP1 ACAP3 DVL1 SCNN1D MIR6726 CPTP CPSF3L PUSL1 MIR6808
dgv7n100 Chr.1:1306835 - 1379057 on Build GRCh38 Loss TAS1R3 MIR6727 MXRA8 AURKAIP1 ACAP3 DVL1 CPTP CPSF3L PUSL1 MIR6808
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss SDF4 LINC01342 TTLL10 MIR200A AURKAIP1 CPSF3L TAS1R3 MIR429 DVL1 MIR6726 B3GALT6 TTLL10-AS1 CPTP C1orf159 ACAP3 RNF223 FAM132A PUSL1 MIR6727 MXRA8 TNFRSF18 SCNN1D TNFRSF4 UBE2J2 MIR200B MIR6808
dgv6n100 Chr.1:1301750 - 1362354 on Build GRCh38 Gain+Loss TAS1R3 MIR6727 MXRA8 ACAP3 DVL1 CPTP CPSF3L PUSL1 MIR6808
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication SDF4 LINC01342 TTLL10 MIR200A CPSF3L TAS1R3 MIR429 MIR6726 B3GALT6 AGRN TTLL10-AS1 CPTP C1orf159 ACAP3 RNF223 FAM132A PUSL1 MIR6727 TNFRSF18 SCNN1D LOC100288175 LOC105378948 TNFRSF4 UBE2J2 MIR200B
nsv1160788 Chr.1:1282706 - 1376336 on Build GRCh38 Deletion TAS1R3 MIR6727 MXRA8 AURKAIP1 ACAP3 DVL1 SCNN1D MIR6726 CPTP CPSF3L PUSL1 MIR6808
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss SDF4 ATAD3C MMP23B MMP23A ANKRD65 LOC100287934 NOC2L FAM87B MIR429 DVL1 PLEKHN1 MIR6726 B3GALT6 SLC35E2B AGRN TTLL10-AS1 NADK TMEM240 FNDC10 ACAP3 LOC102724312 CDK11B MRPL20 PUSL1 VWA1 SCNN1D ATAD3B CCNL2 LINC00115 SSU72 MIR200B TMEM88B MIR6808 LOC148413 LINC01342 TTLL10 KLHL17 MIR200A AURKAIP1 SAMD11 LOC107985729 CPSF3L TAS1R3 LOC100130417 CPTP SLC35E2 PERM1 C1orf159 CDK11A LOC284600 RNF223 LINC01128 LOC100288069 FAM132A FAM41C LOC107985728 MIB2 MIR6727 MXRA8 ATAD3A TNFRSF18 HES4 ISG15 LOC100288175 LOC105378948 TNFRSF4 UBE2J2
esv3890636 Chr.1:1304555 - 1353203 on Build GRCh38 Loss TAS1R3 MIR6727 MXRA8 ACAP3 DVL1 CPTP CPSF3L PUSL1 MIR6808
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion SDF4 LINC01342 ATAD3C TTLL10 MIR200A MMP23B AURKAIP1 ANKRD65 LOC107985729 CPSF3L TAS1R3 MIR429 DVL1 MIR6726 B3GALT6 TTLL10-AS1 CPTP TMEM240 FNDC10 C1orf159 ACAP3 LOC102724312 FAM132A CDK11B MRPL20 PUSL1 VWA1 MIB2 MIR6727 MXRA8 ATAD3A TNFRSF18 SCNN1D ATAD3B TNFRSF4 UBE2J2 CCNL2 SSU72 MIR200B TMEM88B MIR6808 LOC148413
nsv1000169 Chr.1:1281678 - 1362354 on Build GRCh38 Gain TAS1R3 MIR6727 MXRA8 ACAP3 DVL1 SCNN1D MIR6726 CPTP CPSF3L PUSL1 MIR6808
esv2758912 Chr.1:1263940 - 1384492 on Build GRCh38 Loss AURKAIP1 ACAP3 CPSF3L PUSL1 TAS1R3 MIR6727 MXRA8 DVL1 SCNN1D MIR6726 UBE2J2 CPTP MIR6808
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain SDF4 LINC01342 TTLL10 KLHL17 MIR200A AURKAIP1 ANKRD65 NOC2L SAMD11 CPSF3L TAS1R3 MIR429 DVL1 PLEKHN1 MIR6726 B3GALT6 AGRN TTLL10-AS1 LOC100130417 CPTP PERM1 C1orf159 ACAP3 LOC284600 RNF223 FAM132A MRPL20 PUSL1 LOC107985728 MIR6727 MXRA8 TNFRSF18 HES4 SCNN1D ISG15 LOC100288175 LOC105378948 TNFRSF4 UBE2J2 CCNL2 MIR200B TMEM88B MIR6808 LOC148413
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain SDF4 TTLL10 MIR200A ACAP3 FAM132A CPSF3L PUSL1 MIR6727 MIR429 TNFRSF18 SCNN1D MIR6726 TNFRSF4 UBE2J2 B3GALT6 TTLL10-AS1 MIR200B

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