Genomic Map
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Target Gene Details
Entrez Gene ID: | 3978 |
Gene Name: | DNA ligase 1 |
Gene Aliases: |
- |
Location: |
Chr.19:48115445-48170603 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 19 - Exon 20 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| LIG1 | NM_000234.2 | NP_000225.1 | ||
| NM_001289063.1 | NP_001275992.1 | |||
| NM_001289064.1 | NP_001275993.1 | |||
| NM_001320970.1 | NP_001307899.1 | |||
| NM_001320971.1 | NP_001307900.1 | |||
| NR_110296.1 | ||||
| NR_135497.1 | ||||
| NR_135498.1 | ||||
| NR_135499.1 | ||||
| NR_135500.1 | ||||
| NR_135501.1 | ||||
| XM_017026809.1 | XP_016882298.1 | |||
| AB208791.1 | BAD92028.1 | |||
| AK225863.1 | ||||
| AK297296.1 | ||||
| AK300370.1 | ||||
| AK300607.1 | ||||
| AK314210.1 | ||||
| BC108318.1 | AAI08319.1 | |||
| BC110622.2 | AAI10623.1 | |||
| M36067.1 | AAA59518.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv833853 | Chr.19:47982539 - 48184317 on Build GRCh38 | Loss |
 C19orf68
ELSPBP1
PLA2G4C-AS1
BSPH1
PLA2G4C
CABP5
LIG1
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
PLA2G4C-AS1
VRK3
PRRG2
RPL13A
PLA2G4C
AP2A1
FTL
IZUMO1
CGB2
FLT3LG
CA11
MIR150
SNAR-A5
CGB8
MIR4749
CABP5
SNAR-A2
CARD8-AS1
KDELR1
MIR6799
PTOV1-AS1
SCAF1
SNORD35A
TMEM143
MIR4751
RPS11
RCN3
MIR4324
DHDH
RUVBL2
GRIN2D
IRF3
SNAR-G1
TSKS
SNAR-A10
SPACA4
HSD17B14
SYNGR4
SNAR-A12
PRMT1
LOC100287477
SLC6A16
SNAR-A11
CD37
GFY
CGB3
LHB
TEAD2
MIR6798
C19orf68
MIR5088
MED25
SNAR-D
SNAR-B2
FCGRT
AKT1S1
IL4I1
NUP62
SEC1P
PRR12
FUT1
TBC1D17
CARD8
NTF4
SIGLEC16
PPFIA3
ADM5
FUT2
LOC101059948
SNAR-B1
LOC105447645
SNAR-A8
NTN5
NOSIP
CCDC114
SNAR-C3
LIG1
BCAT2
PIH1D1
FAM83E
KCNJ14
KCNA7
EMP3
RRAS
SLC17A7
C19orf73
PNKP
SNAR-A9
NUCB1
BAX
GYS1
SNAR-A3
TRPM4
SNAR-A7
PTH2
ZNF114
SNAR-A14
CGB7
SNAR-C2
MIR4750
CGB5
SNORD32A
HRC
SNORD33
LOC105372430
TULP2
PTOV1-AS2
LMTK3
ATF5
SNORD35B
SNAR-A6
GRWD1
SPHK2
CYTH2
BSPH1
MAMSTR
PTOV1
DBP
CPT1C
DKKL1
SNAR-A4
ZNF473
PLEKHA4
RASIP1
SNRNP70
RPL18
SNAR-A13
CGB1
MIR6800
SNORD34
FGF21
CCDC155
ELSPBP1
SNAR-C1
PPP1R15A
LIN7B
SNAR-C4
BCL2L12
SNAR-A1
LOC101928295
NUCB1-AS1
SULT2B1
SNAR-C5
ALDH16A1
FUZ
SNAR-G2
FLJ26850
SIGLEC11
|
| esv34181 | Chr.19:48009377 - 48416682 on Build GRCh38 | Loss |
C19orf68
ELSPBP1
ZNF114
PLA2G4C-AS1
TMEM143
SYNGR4
PLA2G4C
CCDC114
LIG1
EMP3
CARD8
CABP5
CARD8-AS1
KDELR1
GRIN2D
|
| nsv953596 | Chr.19:48120744 - 48134943 on Build GRCh38 | Deletion |
LIG1
|
Back To TopMore Information
Set Membership: |
Intragenic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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