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See other AGPAT1 CNV Assays ›
Gene Symbol
AGPAT1
Assay Reference Genome
Location

Chr.6:32171311 on build GRCh38
Cytoband
6p21.32
Assay ID Hs01478414_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10554

Gene Name:

 1-acylglycerol-3-phosphate O-acyltransferase 1

Gene Aliases:

 1-AGPAT1, G15, LPAAT-alpha, LPAATA

Location:

 Chr.6:32168206-32178111 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 5 - Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGPAT1 NM_006411.3 NP_006402.1
NM_032741.4 NP_116130.2
XM_005248805.3 XP_005248862.1
XM_005248806.2 XP_005248863.1
XM_011514234.1 XP_011512536.1
AF007145.1 AAC19153.1
AF218034.1 AAG17276.1
AK056346.1
AK058025.1
AK129818.1
AK299252.1
AK315950.1
BC002402.2 AAH02402.1
BC003007.1 AAH03007.1
BC004310.1 AAH04310.1
BC090849.1 AAH90849.1
DA529681.1
DB118884.1
U56417.1 AAB58775.1
U75971.1 AAB96378.1
Y09565.1 CAA70758.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss MIR6721 TNXB EGFL8 AGER MIR6833 LOC100507547 GPSM3 PPT2 PPT2-EGFL8 FKBPL NOTCH4 AGPAT1 ATF6B PBX2 RNF5 PRRT1
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss TNXA C6orf10 EGFL8 AGER CYP21A2 HLA-DQB1-AS1 LOC100507547 HLA-DQA2 HLA-DRA PPT2 CYP21A1P HLA-DQA1 ATF6B PBX2 C4A MIR3135B HCG23 MIR6721 LOC101929163 BTNL2 TNXB HLA-DRB1 MIR6833 GPSM3 PPT2-EGFL8 FKBPL C4B NOTCH4 AGPAT1 HLA-DQB2 HLA-DRB6 HLA-DRB5 RNF5 PRRT1 HLA-DQB1
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss C6orf48 SLC44A4 C6orf10 EGFL8 AGER HLA-DQB1-AS1 LOC100507547 MIR1236 NEU1 HLA-DRA NELFE CYP21A1P PBX2 C4A HCG23 MIR6721 LOC101929163 BTNL2 ZBTB12 EHMT2 C2 STK19 MIR6833 GPSM3 PPT2-EGFL8 FKBPL C4B AGPAT1 HLA-DRB6 C2-AS1 HLA-DRB5 RNF5 HLA-DQB1 TNXA SNORD48 CYP21A2 HSPA1B SNORD52 HSPA1A PPT2 SKIV2L CFB HLA-DQA1 ATF6B DXO TNXB HLA-DRB1 NOTCH4 PRRT1
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss TNXA EGFL8 AGER CYP21A2 LOC100507547 MIR1236 PPT2 NELFE SKIV2L CYP21A1P CFB ATF6B PBX2 DXO C4A MIR6721 TNXB C2 STK19 MIR6833 GPSM3 PPT2-EGFL8 FKBPL C4B NOTCH4 AGPAT1 C2-AS1 RNF5 PRRT1
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion C6orf48 CSNK2B ATP6V1G2-DDX39B SLC44A4 C6orf10 EGFL8 AGER SNORA38 MSH5 LOC100507547 MIR1236 NEU1 LOC100287329 HLA-DRA DDX39B-AS1 NFKBIL1 NELFE CYP21A1P LOC102725068 PRRC2A SNORD117 C6orf47 LY6G6F DDAH2 PBX2 C4A HCG23 MIR6721 LOC101929163 BTNL2 ZBTB12 EHMT2 NCR3 C2 STK19 MIR6833 SNORD84 GPSM3 GPANK1 PPT2-EGFL8 FKBPL DDX39B LSM2 C4B LTB AGPAT1 HLA-DRB6 C2-AS1 HLA-DRB5 RNF5 AIF1 HCP5 HCG26 TNXA LY6G6E SNORD48 MSH5-SAPCD1 CYP21A2 HSPA1B SAPCD1-AS1 SAPCD1 SNORD52 MICB LY6G6C APOM HSPA1A PPT2 BAG6 SKIV2L ATP6V1G2 CFB ATF6B DXO LY6G6D VWA7 LY6G5B TNF MCCD1 LY6G5C TNXB MIR6832 HLA-DRB1 ABHD16A CLIC1 LST1 MIR4646 LTA HSPA1L NOTCH4 C6orf25 VARS PRRT1
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion CSNK2B SLC44A4 C6orf10 PFDN6 SNORA38 HLA-DQB1-AS1 LOC100507547 ZBTB9 NEU1 HLA-DQA2 HCG25 HLA-DRA NFKBIL1 KIFC1 SNORD117 C6orf47 LY6G6F DDAH2 C4A HLA-DMA HLA-DMB HCG23 LOC101929163 BTNL2 STK19 B3GALT4 MIR6873 MIR6833 PSMB9 PSMB8 SNORD84 GPSM3 LSM2 MIR6834 C4B LTB HLA-DRB6 AIF1 HCG26 ZBTB22 SLC39A7 LY6G6E MSH5-SAPCD1 WDR46 CYP21A2 SNORD52 HLA-DOB MICB LY6G6C HSPA1A HCG24 PHF1 PPT2 BAG6 SKIV2L CFB BRD2 ATF6B LY6G6D VWA7 TNF PPP1R2P1 TNXB RXRB LST1 HSD17B8 DAXX HLA-DPA1 C6orf48 ATP6V1G2-DDX39B TAP2 EGFL8 AGER MSH5 MIR1236 LOC100287329 DDX39B-AS1 PSMB8-AS1 NELFE CYP21A1P LOC102725068 PRRC2A TAP1 PBX2 RING1 MIR6721 ZBTB12 EHMT2 NCR3 C2 HLA-DPB2 COL11A2 GPANK1 PPT2-EGFL8 FKBPL DDX39B AGPAT1 SYNGAP1 HLA-DQB2 C2-AS1 MIR5004 RGL2 HLA-DRB5 RNF5 HLA-DQB1 HCP5 TNXA VPS52 HLA-DOA LOC100294145 SNORD48 CUTA HSPA1B SAPCD1-AS1 SAPCD1 TAPBP APOM ATP6V1G2 HLA-DQA1 HLA-DPB1 DXO LY6G5B MIR3135B MCCD1 LY6G5C MIR6832 HLA-DRB1 MIR219A1 ABHD16A CLIC1 MIR4646 LTA HSPA1L NOTCH4 C6orf25 RPS18 VARS PRRT1
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss MIR6721 TNXB EGFL8 AGER MIR6833 LOC100507547 GPSM3 PPT2 PPT2-EGFL8 FKBPL NOTCH4 AGPAT1 ATF6B PBX2 RNF5 PRRT1
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion CSNK2B SLC44A4 C6orf10 PFDN6 SNORA38 HLA-DQB1-AS1 LOC100507547 ZBTB9 NEU1 HLA-DQA2 HCG25 HLA-DRA NFKBIL1 KIFC1 SNORD117 C6orf47 LY6G6F DDAH2 C4A HLA-DMA HLA-DMB HCG23 LOC101929163 BTNL2 STK19 B3GALT4 MIR6873 MIR6833 PSMB9 PSMB8 SNORD84 GPSM3 LSM2 MIR6834 C4B LTB HLA-DRB6 AIF1 HCG26 ZBTB22 SLC39A7 LY6G6E MSH5-SAPCD1 WDR46 CYP21A2 SNORD52 HLA-DOB MICB LY6G6C HSPA1A HCG24 PHF1 PPT2 BAG6 SKIV2L CFB BRD2 ATF6B LY6G6D VWA7 TNF PPP1R2P1 TNXB RXRB LST1 HSD17B8 DAXX HLA-DPA1 C6orf48 ATP6V1G2-DDX39B TAP2 EGFL8 AGER MSH5 MIR1236 LOC100287329 DDX39B-AS1 PSMB8-AS1 NELFE CYP21A1P LOC102725068 PRRC2A TAP1 PBX2 RING1 MIR6721 ZBTB12 EHMT2 NCR3 C2 HLA-DPB2 COL11A2 GPANK1 PPT2-EGFL8 FKBPL DDX39B AGPAT1 SYNGAP1 HLA-DQB2 C2-AS1 MIR5004 RGL2 HLA-DRB5 RNF5 HLA-DQB1 HCP5 TNXA VPS52 HLA-DOA LOC100294145 SNORD48 CUTA HSPA1B SAPCD1-AS1 SAPCD1 TAPBP APOM ATP6V1G2 HLA-DQA1 HLA-DPB1 DXO LY6G5B MIR3135B MCCD1 LY6G5C MIR6832 HLA-DRB1 MIR219A1 ABHD16A CLIC1 MIR4646 LTA HSPA1L NOTCH4 C6orf25 RPS18 VARS PRRT1
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss C6orf48 CSNK2B ATP6V1G2-DDX39B SLC44A4 C6orf10 EGFL8 AGER SNORA38 MSH5 LOC100507547 MIR1236 NEU1 LOC100287329 HLA-DRA DDX39B-AS1 NFKBIL1 NELFE CYP21A1P LOC102725068 PRRC2A SNORD117 C6orf47 LY6G6F DDAH2 PBX2 MICA MIR6891 C4A HCG23 MIR6721 LOC101929163 BTNL2 ZBTB12 EHMT2 NCR3 C2 STK19 MIR6833 SNORD84 GPSM3 GPANK1 PPT2-EGFL8 FKBPL DDX39B LSM2 C4B LTB AGPAT1 C2-AS1 RNF5 AIF1 HCP5 HCG26 TNXA LY6G6E SNORD48 MSH5-SAPCD1 CYP21A2 HSPA1B SAPCD1-AS1 SAPCD1 SNORD52 MICB LY6G6C APOM HSPA1A PPT2 BAG6 HLA-B SKIV2L ATP6V1G2 CFB ATF6B DXO LY6G6D VWA7 LY6G5B TNF MCCD1 LY6G5C TNXB MIR6832 ABHD16A CLIC1 LST1 MIR4646 LTA HSPA1L NOTCH4 C6orf25 VARS PRRT1

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