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See other AGPAT1 CNV Assays ›
Gene Symbol
AGPAT1
Assay Reference Genome
Location

Chr.6:32171311 on build GRCh38
Cytoband
6p21.32
Assay ID Hs01478414_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10554

Gene Name:

 1-acylglycerol-3-phosphate O-acyltransferase 1

Gene Aliases:

 1-AGPAT1, G15, LPAAT-alpha, LPAATA

Location:

 Chr.6:32168206-32178111 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 5 - Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGPAT1 NM_006411.3 NP_006402.1
NM_032741.4 NP_116130.2
XM_005248805.3 XP_005248862.1
XM_005248806.2 XP_005248863.1
XM_011514234.1 XP_011512536.1
AF007145.1 AAC19153.1
AF218034.1 AAG17276.1
AK056346.1
AK058025.1
AK129818.1
AK299252.1
AK315950.1
BC002402.2 AAH02402.1
BC003007.1 AAH03007.1
BC004310.1 AAH04310.1
BC090849.1 AAH90849.1
DA529681.1
DB118884.1
U56417.1 AAB58775.1
U75971.1 AAB96378.1
Y09565.1 CAA70758.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss PRRT1 EGFL8 MIR6721 AGPAT1 PPT2 LOC100507547 MIR6833 PBX2 GPSM3 TNXB FKBPL ATF6B AGER NOTCH4 RNF5 PPT2-EGFL8
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss DXO PRRT1 HSPA1B CYP21A1P LOC100507547 TNXB FKBPL C4B C6orf10 AGER STK19 C2-AS1 PPT2-EGFL8 EGFL8 AGPAT1 PPT2 MIR1236 HLA-DRB6 GPSM3 HLA-DQB1-AS1 ATF6B NOTCH4 CFB RNF5 HLA-DQA1 NEU1 C4A CYP21A2 LOC101929163 MIR6833 HLA-DRA PBX2 HLA-DRB5 BTNL2 HSPA1A SNORD48 HLA-DRB1 EHMT2 C2 NELFE HLA-DQB1 C6orf48 MIR6721 SKIV2L ZBTB12 SNORD52 HCG23 SLC44A4 TNXA
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss PRRT1 CYP21A2 CYP21A1P LOC100507547 LOC101929163 MIR6833 HLA-DRA PBX2 HLA-DQB2 HLA-DRB5 BTNL2 HLA-DRB1 TNXB FKBPL C4B C6orf10 AGER PPT2-EGFL8 HLA-DQB1 EGFL8 MIR6721 AGPAT1 PPT2 HLA-DQA2 HLA-DRB6 GPSM3 HLA-DQB1-AS1 HCG23 ATF6B NOTCH4 RNF5 HLA-DQA1 TNXA MIR3135B C4A
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss DXO PRRT1 CYP21A2 CYP21A1P LOC100507547 MIR6833 PBX2 TNXB FKBPL C4B AGER STK19 C2-AS1 C2 PPT2-EGFL8 NELFE EGFL8 MIR6721 AGPAT1 SKIV2L PPT2 MIR1236 GPSM3 ATF6B NOTCH4 CFB RNF5 TNXA C4A
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion DXO PRRT1 MIR4646 HSPA1B CYP21A1P LOC100507547 SAPCD1-AS1 SNORD117 LY6G5C LTB C6orf47 ATP6V1G2-DDX39B LSM2 LTA VARS TNXB FKBPL C4B MICB C6orf10 AGER STK19 LY6G5B C2-AS1 PPT2-EGFL8 CLIC1 DDAH2 SAPCD1 HCP5 EGFL8 LOC100287329 AIF1 AGPAT1 PPT2 LOC102725068 SNORA38 MIR1236 HLA-DRB6 GPSM3 TNF ATF6B LY6G6D C6orf25 NOTCH4 NCR3 CFB RNF5 NEU1 C4A LY6G6F ATP6V1G2 CYP21A2 LY6G6C CSNK2B PRRC2A LOC101929163 MIR6833 HLA-DRA PBX2 HLA-DRB5 BTNL2 HSPA1A SNORD48 HLA-DRB1 EHMT2 C2 HSPA1L VWA7 NELFE MCCD1 C6orf48 MSH5 MIR6721 ABHD16A SKIV2L BAG6 ZBTB12 SNORD52 NFKBIL1 HCG26 MSH5-SAPCD1 LY6G6E LST1 DDX39B-AS1 HCG23 GPANK1 SLC44A4 APOM SNORD84 TNXA DDX39B MIR6832
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion PRRT1 MIR4646 HSPA1B CYP21A1P HLA-DOB C6orf47 ATP6V1G2-DDX39B DAXX WDR46 FKBPL C4B C2-AS1 CLIC1 DDAH2 SAPCD1 HCG24 HCP5 AIF1 ZBTB22 AGPAT1 SNORA38 HCG25 BRD2 TNF LY6G6D HSD17B8 NCR3 CFB RNF5 HLA-DQA1 MIR3135B NEU1 C4A LY6G6F SYNGAP1 MIR6873 CSNK2B LOC101929163 HLA-DMA HLA-DRA HLA-DQB2 PHF1 HLA-DRB5 LOC100294145 SNORD48 HLA-DRB1 EHMT2 C2 NELFE HLA-DQB1 C6orf48 HLA-DPB1 MIR6721 BAG6 ZBTB12 SNORD52 RXRB NFKBIL1 ZBTB9 HCG26 MSH5-SAPCD1 SLC39A7 LY6G6E SLC44A4 MIR6832 COL11A2 RPS18 DXO LOC100507547 SAPCD1-AS1 SNORD117 RING1 LY6G5C KIFC1 LTB LSM2 LTA VARS TNXB MICB PFDN6 C6orf10 AGER STK19 LY6G5B PPT2-EGFL8 TAP1 HLA-DPB2 EGFL8 PSMB8-AS1 MIR6834 LOC100287329 VPS52 HLA-DOA PSMB8 PPT2 LOC102725068 MIR1236 HLA-DRB6 B3GALT4 GPSM3 HLA-DQB1-AS1 ATF6B C6orf25 NOTCH4 HLA-DPA1 ATP6V1G2 CYP21A2 LY6G6C PRRC2A MIR6833 PBX2 BTNL2 HSPA1A PSMB9 MIR5004 HLA-DMB CUTA PPP1R2P1 HSPA1L MIR219A1 VWA7 MCCD1 TAP2 MSH5 ABHD16A SKIV2L HLA-DQA2 TAPBP RGL2 LST1 DDX39B-AS1 HCG23 GPANK1 APOM SNORD84 TNXA DDX39B
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss PRRT1 EGFL8 MIR6721 AGPAT1 PPT2 LOC100507547 MIR6833 PBX2 GPSM3 TNXB FKBPL ATF6B AGER NOTCH4 RNF5 PPT2-EGFL8
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion PRRT1 MIR4646 HSPA1B CYP21A1P HLA-DOB C6orf47 ATP6V1G2-DDX39B DAXX WDR46 FKBPL C4B C2-AS1 CLIC1 DDAH2 SAPCD1 HCG24 HCP5 AIF1 ZBTB22 AGPAT1 SNORA38 HCG25 BRD2 TNF LY6G6D HSD17B8 NCR3 CFB RNF5 HLA-DQA1 MIR3135B NEU1 C4A LY6G6F SYNGAP1 MIR6873 CSNK2B LOC101929163 HLA-DMA HLA-DRA HLA-DQB2 PHF1 HLA-DRB5 LOC100294145 SNORD48 HLA-DRB1 EHMT2 C2 NELFE HLA-DQB1 C6orf48 HLA-DPB1 MIR6721 BAG6 ZBTB12 SNORD52 RXRB NFKBIL1 ZBTB9 HCG26 MSH5-SAPCD1 SLC39A7 LY6G6E SLC44A4 MIR6832 COL11A2 RPS18 DXO LOC100507547 SAPCD1-AS1 SNORD117 RING1 LY6G5C KIFC1 LTB LSM2 LTA VARS TNXB MICB PFDN6 C6orf10 AGER STK19 LY6G5B PPT2-EGFL8 TAP1 HLA-DPB2 EGFL8 PSMB8-AS1 MIR6834 LOC100287329 VPS52 HLA-DOA PSMB8 PPT2 LOC102725068 MIR1236 HLA-DRB6 B3GALT4 GPSM3 HLA-DQB1-AS1 ATF6B C6orf25 NOTCH4 HLA-DPA1 ATP6V1G2 CYP21A2 LY6G6C PRRC2A MIR6833 PBX2 BTNL2 HSPA1A PSMB9 MIR5004 HLA-DMB CUTA PPP1R2P1 HSPA1L MIR219A1 VWA7 MCCD1 TAP2 MSH5 ABHD16A SKIV2L HLA-DQA2 TAPBP RGL2 LST1 DDX39B-AS1 HCG23 GPANK1 APOM SNORD84 TNXA DDX39B
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss DXO PRRT1 MIR4646 MIR6891 HSPA1B CYP21A1P HLA-B LOC100507547 SAPCD1-AS1 SNORD117 LY6G5C LTB C6orf47 ATP6V1G2-DDX39B LSM2 LTA VARS TNXB FKBPL C4B MICB C6orf10 AGER STK19 LY6G5B C2-AS1 PPT2-EGFL8 CLIC1 DDAH2 SAPCD1 HCP5 EGFL8 LOC100287329 AIF1 AGPAT1 PPT2 LOC102725068 SNORA38 MIR1236 GPSM3 TNF ATF6B LY6G6D C6orf25 NOTCH4 NCR3 CFB RNF5 NEU1 C4A LY6G6F ATP6V1G2 CYP21A2 LY6G6C CSNK2B PRRC2A LOC101929163 MIR6833 HLA-DRA PBX2 BTNL2 HSPA1A SNORD48 EHMT2 C2 HSPA1L MICA VWA7 NELFE MCCD1 C6orf48 MSH5 MIR6721 ABHD16A SKIV2L BAG6 ZBTB12 SNORD52 NFKBIL1 HCG26 MSH5-SAPCD1 LY6G6E LST1 DDX39B-AS1 HCG23 GPANK1 SLC44A4 APOM SNORD84 TNXA DDX39B MIR6832

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