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See other TNFRSF4 CNV Assays ›
Gene Symbol
TNFRSF4
Assay Reference Genome
Location

Chr.1:1214133 on build GRCh38
Cytoband
1p36.33
Assay ID Hs01481232_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 7293

Gene Name:

 TNF receptor superfamily member 4

Gene Aliases:

 ACT35, CD134, IMD16, OX40, TXGP1L

Location:

 Chr.1:1211326-1216812 on Build GRCh38

Assay Gene Location:

 Within Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TNFRSF4 NM_003327.3 1 36 NP_003318.1
XM_011542075.2 1 503 XP_011540377.1
XM_017002231.1 2 1381 XP_016857720.1
XM_017002232.1 2 1381 XP_016857721.1
BC105070.1 1 36 AAI05071.1
BC105072.1 1 36 AAI05073.1
S76792.1 AAB33944.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss GABRD MIR6808 ANKRD65 FAAP20 SAMD11 MXRA8 AURKAIP1 LOC105378948 TNFRSF18 MIR200A PRKCZ LOC102724312 TNFRSF4 OR4F5 CFAP74 MIR200B MTND2P28 LINC00115 DDX11L1 FAM132A CPSF3L FAM87B LOC105378949 MIR1302-2 TMEM240 MIR6859-1 CALML6 LINC01128 RNF223 ATAD3B ATAD3C PUSL1 MIR6726 FAM138A LOC101928626 TTLL10 LOC100288069 LOC105378589 LOC107985728 TTLL10-AS1 MRPL20 SKI KLHL17 LOC100506504 MMP23B OR4F29 ATAD3A MIR429 SLC35E2B LOC100134822 LOC105378591 TMEM88B MIB2 LINC01342 AGRN ISG15 DVL1 LOC100133331 LOC148413 LOC729737 LOC284600 VWA1 PERM1 LOC100129534 MMP23A WASH7P CDK11A C1orf159 LOC100288175 SDF4 ACAP3 LOC100130417 FNDC10 MTND1P23 LOC102725121 FAM41C OR4F16 NOC2L CCNL2 TAS1R3 GNB1 MORN1 SSU72 LOC105378947 TMEM52 LOC107984841 SLC35E2 PLEKHN1 MIR6723 LOC100287934 LOC107985729 LOC100132287 HES4 UBE2J2 NADK SCNN1D MIR6859-2 CPTP MIR6727 CDK11B B3GALT6 LOC105378592
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain RNF223 TNFRSF4 LINC01342 TTLL10 MIR200B UBE2J2 FAM132A MIR429 SCNN1D C1orf159 LOC105378948 SDF4 TTLL10-AS1 TNFRSF18 B3GALT6 MIR200A
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss RNF223 TNFRSF4 MIR6726 LINC01342 TTLL10 MIR200B UBE2J2 FAM132A MIR429 SCNN1D C1orf159 SDF4 TTLL10-AS1 TNFRSF18 B3GALT6 ACAP3 MIR200A
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TNFRSF4 SDF4 TTLL10-AS1 TNFRSF18 B3GALT6 TTLL10
nsv544963 Chr.1:1206945 - 1214281 on Build GRCh38 Loss TNFRSF4 TNFRSF18
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain RNF223 FAM41C LINC01342 NOC2L TTLL10 AGRN SAMD11 ISG15 LOC107985728 LOC105378948 LOC284600 TTLL10-AS1 TNFRSF18 PERM1 MIR200A PLEKHN1 KLHL17 TNFRSF4 MIR200B HES4 MIR429 C1orf159 LOC100288175 SDF4 LOC100130417
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication RNF223 PUSL1 MIR6726 LINC01342 TTLL10 AGRN TAS1R3 LOC105378948 TTLL10-AS1 TNFRSF18 MIR200A TNFRSF4 MIR200B UBE2J2 FAM132A MIR429 SCNN1D CPSF3L C1orf159 LOC100288175 CPTP SDF4 MIR6727 B3GALT6 ACAP3
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MIB2 MIR6808 ANKRD65 LINC01342 AGRN SAMD11 ISG15 MXRA8 AURKAIP1 DVL1 LOC148413 LOC105378948 LOC284600 VWA1 TNFRSF18 PERM1 MIR200A MMP23A LOC102724312 TNFRSF4 MIR200B CDK11A LINC00115 FAM132A CPSF3L C1orf159 LOC100288175 FAM87B SDF4 ACAP3 TMEM240 LOC100130417 FNDC10 LINC01128 RNF223 ATAD3B ATAD3C PUSL1 FAM41C MIR6726 NOC2L TTLL10 CCNL2 TAS1R3 LOC100288069 SSU72 LOC107985728 SLC35E2 TTLL10-AS1 MRPL20 PLEKHN1 KLHL17 MMP23B LOC100287934 LOC107985729 HES4 UBE2J2 ATAD3A NADK MIR429 SCNN1D SLC35E2B CPTP MIR6727 CDK11B B3GALT6 TMEM88B
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss RNF223 FAM41C LINC01342 NOC2L TTLL10 AGRN SAMD11 ISG15 LOC107985728 LOC105378948 LOC284600 TTLL10-AS1 TNFRSF18 PERM1 MIR200A PLEKHN1 KLHL17 TNFRSF4 MIR200B HES4 LINC00115 UBE2J2 FAM132A MIR429 C1orf159 LOC100288175 FAM87B SDF4 B3GALT6 LOC100130417 LINC01128
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion ATAD3B MIB2 ATAD3C MIR6808 ANKRD65 PUSL1 MIR6726 LINC01342 TTLL10 CCNL2 TAS1R3 MXRA8 AURKAIP1 DVL1 SSU72 LOC148413 TTLL10-AS1 VWA1 TNFRSF18 MRPL20 MIR200A MMP23B LOC102724312 TNFRSF4 LOC107985729 MIR200B UBE2J2 ATAD3A FAM132A MIR429 SCNN1D CPSF3L C1orf159 CPTP SDF4 MIR6727 CDK11B B3GALT6 ACAP3 TMEM240 FNDC10 TMEM88B
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain RNF223 MIR6808 ANKRD65 PUSL1 MIR6726 LINC01342 NOC2L TTLL10 AGRN CCNL2 SAMD11 TAS1R3 ISG15 MXRA8 AURKAIP1 DVL1 LOC148413 LOC107985728 LOC105378948 LOC284600 TTLL10-AS1 TNFRSF18 MRPL20 PERM1 MIR200A PLEKHN1 KLHL17 TNFRSF4 MIR200B HES4 UBE2J2 FAM132A MIR429 SCNN1D CPSF3L C1orf159 LOC100288175 CPTP SDF4 MIR6727 B3GALT6 ACAP3 LOC100130417 TMEM88B
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion RNF223 TNFRSF4 LINC01342 NOC2L TTLL10 AGRN MIR200B SAMD11 HES4 ISG15 MIR429 C1orf159 LOC100288175 LOC105378948 SDF4 TTLL10-AS1 TNFRSF18 PERM1 MIR200A PLEKHN1 KLHL17
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain PUSL1 TNFRSF4 MIR6726 TTLL10 MIR200B UBE2J2 FAM132A MIR429 SCNN1D CPSF3L SDF4 MIR6727 TTLL10-AS1 TNFRSF18 B3GALT6 ACAP3 MIR200A

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