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Gene Symbol
TRAPPC2L
Assay Reference Genome
Location

Chr.16:88859908 on build GRCh38
Cytoband
16q24.3
Assay ID Hs01486505_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 51693

Gene Name:

 trafficking protein particle complex 2-like

Gene Aliases:

 HSPC176

Location:

 Chr.16:88856220-88862686 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRAPPC2L NM_001318524.1 NP_001305453.1
NM_001318525.1 NP_001305454.1
NM_001318526.1 NP_001305455.1
NM_001318527.1 NP_001305456.1
NM_001318528.1 NP_001305457.1
NM_001318529.1 NP_001305458.1
NM_001318530.1 NP_001305459.1
NM_001318532.1 NP_001305461.1
NM_016209.4 NP_057293.1
NR_134670.1
NR_134671.1
XM_017023270.1 XP_016878759.1
AF089106.1 AAF00568.1
AF161524.1 AAF29139.1
AK126779.1 BAC86686.1
AK307253.1
AK310805.1
AK311885.1
AX771012.1 CAE01175.1
AX771013.1 CAE01176.1
AX771014.1 CAE01177.1
BC011369.1 AAH11369.1
BC018024.1 AAH18024.1
BC105809.1 AAI05810.1
BG283878.1
BI754306.1
BX340702.2
BX384775.2
BX419849.2
DA209193.1
DA293122.1
DA295904.1
DA833474.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv37n68 Chr.16:88767460 - 88944903 on Build GRCh38 Loss APRT LOC105371409 LOC100129697 LOC101927793 GALNS PIEZO1 PABPN1L CDT1 CBFA2T3 LOC107987238 TRAPPC2L
nsv1063024 Chr.16:88707330 - 89238482 on Build GRCh38 Gain LINC00304 LOC105371409 LOC100129697 LOC101927793 CDT1 CBFA2T3 SLC22A31 LOC107987238 ZNF778 LOC100289580 APRT GALNS PIEZO1 CDH15 PABPN1L CTU2 LOC400558 MIR4722 ACSF3 TRAPPC2L LOC339059
nsv471115 Chr.16:88801844 - 89197442 on Build GRCh38 Loss LINC00304 LOC105371409 LOC100129697 LOC101927793 CDT1 CBFA2T3 SLC22A31 LOC107987238 APRT GALNS CDH15 PABPN1L LOC400558 ACSF3 TRAPPC2L
nsv573674 Chr.16:88738775 - 89325907 on Build GRCh38 Gain LOC105371414 LINC00304 LOC105371409 LOC100129697 LOC101927793 LOC100287036 CDT1 CBFA2T3 SLC22A31 LOC107987238 ZNF778 LOC100289580 APRT GALNS PIEZO1 CDH15 PABPN1L ANKRD11 LOC400558 ACSF3 TRAPPC2L LOC339059
esv3639555 Chr.16:88745961 - 88899576 on Build GRCh38 Gain APRT LOC101927793 GALNS PIEZO1 PABPN1L CDT1 CBFA2T3 LOC107987238 TRAPPC2L
nsv952071 Chr.16:88790893 - 89019992 on Build GRCh38 Deletion APRT LOC105371409 LOC100129697 LOC101927793 GALNS PABPN1L CDT1 CBFA2T3 LOC107987238 TRAPPC2L
nsv521217 Chr.16:88805821 - 89174375 on Build GRCh38 Loss LINC00304 LOC105371409 LOC100129697 LOC101927793 CDT1 CBFA2T3 LOC107987238 APRT GALNS CDH15 PABPN1L LOC400558 ACSF3 TRAPPC2L
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss DBNDD1 IL17C SNORD68 LOC100129697 SNAI3-AS1 LOC100287036 ZNF276 GAS8-AS1 FANCA SPG7 RNF166 APRT LOC105371419 CPNE7 GALNS PIEZO1 ANKRD11 CDK10 GAS8 LOC101927793 CBFA2T3 SLC22A31 LOC107987238 MVD TUBB3 ZNF778 SPIRE2 MC1R SPATA33 PABPN1L FAM157C CENPBD1 MIR4722 TRAPPC2L LOC105371414 TCF25 LOC105371409 CDT1 RPL13 CYBA SPATA2L CHMP1A LOC107984817 TUBB8P7 CTU2 DPEP1 DEF8 URAHP LOC101927817 LINC00304 AFG3L1P VPS9D1-AS1 SNAI3 VPS9D1 LOC100289580 PRDM7 CDH15 LOC400558 ACSF3 LOC339059
esv3639561 Chr.16:88837996 - 88882065 on Build GRCh38 Gain GALNS PABPN1L CBFA2T3 TRAPPC2L
nsv1061256 Chr.16:88711587 - 89013365 on Build GRCh38 Gain LOC105371409 LOC100129697 LOC101927793 CDT1 CBFA2T3 LOC107987238 LOC100289580 APRT GALNS PIEZO1 PABPN1L CTU2 MIR4722 TRAPPC2L LOC339059
nsv1063441 Chr.16:88767066 - 88861882 on Build GRCh38 Loss APRT GALNS PIEZO1 CDT1 LOC107987238 TRAPPC2L

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

membrane traffic protein

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