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See other TRAPPC2L CNV Assays ›
Gene Symbol
TRAPPC2L
Assay Reference Genome
Location

Chr.16:88859908 on build GRCh38
Cytoband
16q24.3
Assay ID Hs01486505_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 51693

Gene Name:

 trafficking protein particle complex 2-like

Gene Aliases:

 HSPC176

Location:

 Chr.16:88856220-88862686 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRAPPC2L NM_001318524.1 NP_001305453.1
NM_001318525.1 NP_001305454.1
NM_001318526.1 NP_001305455.1
NM_001318527.1 NP_001305456.1
NM_001318528.1 NP_001305457.1
NM_001318529.1 NP_001305458.1
NM_001318530.1 NP_001305459.1
NM_001318532.1 NP_001305461.1
NM_016209.4 NP_057293.1
NR_134670.1
NR_134671.1
XM_017023270.1 XP_016878759.1
AF089106.1 AAF00568.1
AF161524.1 AAF29139.1
AK126779.1 BAC86686.1
AK307253.1
AK310805.1
AK311885.1
AX771012.1 CAE01175.1
AX771013.1 CAE01176.1
AX771014.1 CAE01177.1
BC011369.1 AAH11369.1
BC018024.1 AAH18024.1
BC105809.1 AAI05810.1
BG283878.1
BI754306.1
BX340702.2
BX384775.2
BX419849.2
DA209193.1
DA293122.1
DA295904.1
DA833474.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv37n68 Chr.16:88767460 - 88944903 on Build GRCh38 Loss CDT1 PIEZO1 PABPN1L LOC107987238 LOC100129697 APRT GALNS LOC105371409 LOC101927793 TRAPPC2L CBFA2T3
nsv1063024 Chr.16:88707330 - 89238482 on Build GRCh38 Gain CDT1 LOC339059 MIR4722 CTU2 LINC00304 PABPN1L LOC107987238 APRT LOC101927793 TRAPPC2L CBFA2T3 ZNF778 SLC22A31 PIEZO1 LOC100289580 CDH15 LOC400558 ACSF3 LOC100129697 GALNS LOC105371409
nsv471115 Chr.16:88801844 - 89197442 on Build GRCh38 Loss CDT1 LINC00304 PABPN1L LOC107987238 APRT LOC101927793 TRAPPC2L CBFA2T3 SLC22A31 CDH15 LOC400558 ACSF3 LOC100129697 GALNS LOC105371409
nsv573674 Chr.16:88738775 - 89325907 on Build GRCh38 Gain CDT1 LOC339059 LINC00304 LOC105371414 PABPN1L LOC107987238 APRT LOC101927793 TRAPPC2L CBFA2T3 ZNF778 SLC22A31 LOC100287036 PIEZO1 ANKRD11 LOC100289580 CDH15 LOC400558 ACSF3 LOC100129697 GALNS LOC105371409
esv3639555 Chr.16:88745961 - 88899576 on Build GRCh38 Gain CDT1 PIEZO1 PABPN1L LOC107987238 APRT GALNS LOC101927793 TRAPPC2L CBFA2T3
nsv819907 Chr.16:88805821 - 88860813 on Build GRCh38 Gain CDT1 LOC107987238 APRT GALNS TRAPPC2L
nsv952071 Chr.16:88790893 - 89019992 on Build GRCh38 Deletion CDT1 PABPN1L LOC107987238 LOC100129697 APRT GALNS LOC105371409 LOC101927793 TRAPPC2L CBFA2T3
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss CDT1 CTU2 LOC107987238 DEF8 AFG3L1P ZNF778 CENPBD1 SPIRE2 LOC100287036 PRDM7 FANCA LOC107984817 LOC100129697 GALNS LOC101927817 MC1R LOC339059 MIR4722 IL17C PABPN1L VPS9D1 TUBB3 TCF25 RNF166 ANKRD11 SNAI3 ACSF3 ZNF276 DBNDD1 DPEP1 RPL13 TUBB8P7 MVD LOC105371414 FAM157C SPG7 LOC105371419 CDK10 APRT LOC101927793 CBFA2T3 SLC22A31 PIEZO1 LOC400558 VPS9D1-AS1 LOC105371409 SNORD68 CPNE7 LINC00304 URAHP GAS8 TRAPPC2L CHMP1A CYBA SNAI3-AS1 SPATA2L LOC100289580 CDH15 SPATA33 GAS8-AS1
esv3639561 Chr.16:88837996 - 88882065 on Build GRCh38 Gain PABPN1L GALNS TRAPPC2L CBFA2T3
nsv1063441 Chr.16:88767066 - 88861882 on Build GRCh38 Loss CDT1 PIEZO1 LOC107987238 APRT GALNS TRAPPC2L
dgv3065n100 Chr.16:88711587 - 88927172 on Build GRCh38 Gain CDT1 LOC339059 MIR4722 CTU2 PABPN1L LOC107987238 APRT LOC101927793 TRAPPC2L CBFA2T3 PIEZO1 LOC100289580 GALNS

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

membrane traffic protein

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