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Gene Symbol
DXO
Assay Reference Genome
Location

Chr.6:31970205 on build GRCh38
Cytoband
6p21.33
Assay ID Hs01491204_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 1797

Gene Name:

 decapping exoribonuclease

Gene Aliases:

 DOM3L, DOM3Z, NG6, RAI1

Location:

 Chr.6:31969811-31972290 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 5 - Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
DXO NM_005510.3 NP_005501.2
XM_006715005.3 XP_006715068.1
XM_017010329.1 XP_016865818.1
AF059252.1 AAC78603.1
BC009344.2 AAH09344.1
BC019083.2 AAH19083.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss CYP21A1P MIR1236 PPT2 HLA-DRA SNORD52 C6orf48 AGPAT1 C4A TNXA HSPA1A NELFE MIR6833 TNXB STK19 C4B PRRT1 NEU1 HCG23 MIR6721 HSPA1B HLA-DRB1 PBX2 CFB PPT2-EGFL8 HLA-DRB5 AGER ZBTB12 SKIV2L FKBPL HLA-DQB1-AS1 C2-AS1 DXO C2 CYP21A2 C6orf10 LOC100507547 GPSM3 HLA-DRB6 SLC44A4 EGFL8 BTNL2 LOC101929163 SNORD48 EHMT2 RNF5 HLA-DQA1 ATF6B NOTCH4 HLA-DQB1
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss SKIV2L FKBPL CYP21A1P MIR1236 C2-AS1 PPT2 DXO C2 CYP21A2 LOC100507547 GPSM3 AGPAT1 C4A TNXA NELFE MIR6833 EGFL8 TNXB STK19 C4B PRRT1 MIR6721 RNF5 ATF6B PBX2 NOTCH4 CFB PPT2-EGFL8 AGER
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion SAPCD1-AS1 CYP21A1P MIR1236 SNORD117 PPT2 BAG6 HLA-DRA SNORD52 CLIC1 SAPCD1 C6orf48 AGPAT1 LSM2 C4A TNXA HSPA1A NELFE MIR6833 TNXB STK19 MSH5 TNF MICB C4B PRRT1 NEU1 HCG23 LTB MIR6721 HSPA1B HCG26 VWA7 PRRC2A ATP6V1G2 HLA-DRB1 MCCD1 MIR6832 PBX2 C6orf47 CFB LY6G5B PPT2-EGFL8 LY6G5C HSPA1L HLA-DRB5 SNORD84 LOC100287329 LY6G6C AGER ZBTB12 SKIV2L FKBPL MIR4646 C2-AS1 APOM DXO C2 CYP21A2 MSH5-SAPCD1 C6orf10 SNORA38 GPANK1 LTA DDAH2 LOC100507547 GPSM3 HLA-DRB6 NFKBIL1 DDX39B-AS1 ATP6V1G2-DDX39B SLC44A4 EGFL8 LY6G6F BTNL2 LOC101929163 LY6G6D SNORD48 EHMT2 RNF5 ABHD16A LY6G6E ATF6B LOC102725068 NOTCH4 NCR3 VARS HCP5 C6orf25 LST1 AIF1 DDX39B CSNK2B
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion ZBTB9 PSMB9 SAPCD1-AS1 CYP21A1P RXRB MIR1236 BAG6 HLA-DRA PPP1R2P1 HLA-DPB1 CLIC1 TNXA HSPA1A HLA-DMB MIR6833 HSD17B8 STK19 HCG25 MICB C4B PRRT1 NEU1 HLA-DQA2 HCG23 MIR219A1 LTB VWA7 HLA-DPA1 HLA-DPB2 ATP6V1G2 HLA-DRB1 MCCD1 MIR6832 SYNGAP1 PBX2 C6orf47 CFB LY6G5B SNORD84 LOC100287329 LY6G6C VPS52 ZBTB12 SKIV2L FKBPL RGL2 MIR4646 APOM C6orf10 SNORA38 GPANK1 GPSM3 NFKBIL1 DDX39B-AS1 ATP6V1G2-DDX39B SLC44A4 ZBTB22 LY6G6F BTNL2 LOC101929163 SNORD48 MIR6834 RNF5 VARS HCP5 C6orf25 LST1 CUTA SNORD117 PPT2 WDR46 MIR3135B SNORD52 SAPCD1 C6orf48 RPS18 AGPAT1 PFDN6 LSM2 C4A NELFE KIFC1 TNXB MSH5 TNF PSMB8-AS1 PHF1 LOC100294145 MIR6721 HSPA1B HCG26 PSMB8 PRRC2A HLA-DOB PPT2-EGFL8 LY6G5C HSPA1L HLA-DRB5 MIR6873 AGER HLA-DOA HLA-DQB1-AS1 SLC39A7 C2-AS1 DXO C2 CYP21A2 MSH5-SAPCD1 LTA DDAH2 HLA-DQB2 RING1 MIR5004 LOC100507547 HLA-DRB6 EGFL8 BRD2 LY6G6D TAP1 HLA-DMA HCG24 EHMT2 B3GALT4 ABHD16A DAXX HLA-DQA1 LY6G6E ATF6B LOC102725068 NOTCH4 NCR3 TAP2 TAPBP COL11A2 HLA-DQB1 AIF1 DDX39B CSNK2B
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss SAPCD1-AS1 CYP21A1P MIR1236 SNORD117 BAG6 MIR6891 SNORD52 CLIC1 SAPCD1 C6orf48 LSM2 C4A TNXA HSPA1A NELFE TNXB HLA-B STK19 MSH5 TNF MICB C4B NEU1 LTB HSPA1B HCG26 VWA7 PRRC2A ATP6V1G2 MCCD1 MIR6832 C6orf47 CFB LY6G5B LY6G5C HSPA1L SNORD84 LOC100287329 LY6G6C ZBTB12 MICA SKIV2L MIR4646 C2-AS1 APOM DXO C2 CYP21A2 MSH5-SAPCD1 SNORA38 GPANK1 LTA DDAH2 NFKBIL1 DDX39B-AS1 ATP6V1G2-DDX39B SLC44A4 LY6G6F LY6G6D SNORD48 EHMT2 ABHD16A LY6G6E LOC102725068 NCR3 VARS HCP5 C6orf25 LST1 AIF1 DDX39B CSNK2B
nsv830628 Chr.6:31919777 - 31979823 on Build GRCh38 Loss STK19 SKIV2L CFB MIR1236 C2-AS1 DXO C2 NELFE
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion ZBTB9 PSMB9 SAPCD1-AS1 CYP21A1P RXRB MIR1236 BAG6 HLA-DRA PPP1R2P1 HLA-DPB1 CLIC1 TNXA HSPA1A HLA-DMB MIR6833 HSD17B8 STK19 HCG25 MICB C4B PRRT1 NEU1 HLA-DQA2 HCG23 MIR219A1 LTB VWA7 HLA-DPA1 HLA-DPB2 ATP6V1G2 HLA-DRB1 MCCD1 MIR6832 SYNGAP1 PBX2 C6orf47 CFB LY6G5B SNORD84 LOC100287329 LY6G6C VPS52 ZBTB12 SKIV2L FKBPL RGL2 MIR4646 APOM C6orf10 SNORA38 GPANK1 GPSM3 NFKBIL1 DDX39B-AS1 ATP6V1G2-DDX39B SLC44A4 ZBTB22 LY6G6F BTNL2 LOC101929163 SNORD48 MIR6834 RNF5 VARS HCP5 C6orf25 LST1 CUTA SNORD117 PPT2 WDR46 MIR3135B SNORD52 SAPCD1 C6orf48 RPS18 AGPAT1 PFDN6 LSM2 C4A NELFE KIFC1 TNXB MSH5 TNF PSMB8-AS1 PHF1 LOC100294145 MIR6721 HSPA1B HCG26 PSMB8 PRRC2A HLA-DOB PPT2-EGFL8 LY6G5C HSPA1L HLA-DRB5 MIR6873 AGER HLA-DOA HLA-DQB1-AS1 SLC39A7 C2-AS1 DXO C2 CYP21A2 MSH5-SAPCD1 LTA DDAH2 HLA-DQB2 RING1 MIR5004 LOC100507547 HLA-DRB6 EGFL8 BRD2 LY6G6D TAP1 HLA-DMA HCG24 EHMT2 B3GALT4 ABHD16A DAXX HLA-DQA1 LY6G6E ATF6B LOC102725068 NOTCH4 NCR3 TAP2 TAPBP COL11A2 HLA-DQB1 AIF1 DDX39B CSNK2B
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss SAPCD1-AS1 CYP21A1P MIR1236 SNORD117 PPT2 BAG6 HLA-DRA MIR6891 SNORD52 CLIC1 SAPCD1 C6orf48 AGPAT1 LSM2 C4A TNXA HSPA1A NELFE MIR6833 TNXB HLA-B STK19 MSH5 TNF MICB C4B PRRT1 NEU1 HCG23 LTB MIR6721 HSPA1B HCG26 VWA7 PRRC2A ATP6V1G2 MCCD1 MIR6832 PBX2 C6orf47 CFB LY6G5B PPT2-EGFL8 LY6G5C HSPA1L SNORD84 LOC100287329 LY6G6C AGER ZBTB12 MICA SKIV2L FKBPL MIR4646 C2-AS1 APOM DXO C2 CYP21A2 MSH5-SAPCD1 C6orf10 SNORA38 GPANK1 LTA DDAH2 LOC100507547 GPSM3 NFKBIL1 DDX39B-AS1 ATP6V1G2-DDX39B SLC44A4 EGFL8 LY6G6F BTNL2 LOC101929163 LY6G6D SNORD48 EHMT2 RNF5 ABHD16A LY6G6E ATF6B LOC102725068 NOTCH4 NCR3 VARS HCP5 C6orf25 LST1 AIF1 DDX39B CSNK2B
nsv5247 Chr.6:31957962 - 32055439 on Build GRCh38 Deletion STK19 SKIV2L C4B CYP21A1P C4A TNXA DXO NELFE CYP21A2 TNXB

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More Information


Additional Information:

For this assay, SNP(s) [rs11334677] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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