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Gene Symbol
DXO
Assay Reference Genome
Location

Chr.6:31970205 on build GRCh38
Cytoband
6p21.33
Assay ID Hs01491204_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 1797

Gene Name:

 decapping exoribonuclease

Gene Aliases:

 DOM3L, DOM3Z, NG6, RAI1

Location:

 Chr.6:31969811-31972290 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 5 - Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
DXO NM_005510.3 NP_005501.2
XM_006715005.3 XP_006715068.1
XM_017010329.1 XP_016865818.1
AF059252.1 AAC78603.1
BC009344.2 AAH09344.1
BC019083.2 AAH19083.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss C6orf10 PPT2 FKBPL C6orf48 C4B SNORD52 MIR6833 GPSM3 HLA-DRB6 LOC101929163 SKIV2L LOC100507547 HLA-DRB5 ZBTB12 CFB TNXA SNORD48 C4A HLA-DQA1 RNF5 HSPA1B PBX2 HLA-DQB1-AS1 EGFL8 NELFE STK19 NOTCH4 AGPAT1 C2-AS1 HSPA1A TNXB BTNL2 CYP21A1P HLA-DRB1 AGER HLA-DRA PRRT1 ATF6B DXO SLC44A4 HLA-DQB1 NEU1 HCG23 MIR1236 C2 EHMT2 CYP21A2 MIR6721 PPT2-EGFL8
nsv428141 Chr.6:31903735 - 32125066 on Build GRCh38 Gain+Loss NELFE ATF6B SKIV2L STK19 DXO CFB C4B TNXA C4A C2-AS1 MIR1236 C2 CYP21A2 TNXB CYP21A1P
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion MCCD1 C6orf10 LOC102725068 SNORD117 PRRC2A SAPCD1 MIR6832 PPT2 FKBPL GPANK1 MSH5 ABHD16A C6orf48 SNORD84 C4B SNORD52 HCP5 C6orf25 MIR6833 DDX39B-AS1 GPSM3 HLA-DRB6 LOC101929163 SKIV2L DDAH2 LOC100507547 HCG26 HLA-DRB5 ZBTB12 CFB CSNK2B TNXA SNORD48 C4A RNF5 HSPA1B SAPCD1-AS1 PBX2 LOC100287329 ATP6V1G2 EGFL8 NELFE LSM2 NCR3 STK19 VWA7 NOTCH4 TNF VARS BAG6 AGPAT1 C6orf47 MICB C2-AS1 LY6G5B LST1 MSH5-SAPCD1 LTB LY6G6F DDX39B HSPA1A HSPA1L TNXB BTNL2 LY6G6D LY6G6E CYP21A1P HLA-DRB1 AGER HLA-DRA PRRT1 ATP6V1G2-DDX39B ATF6B MIR4646 DXO NFKBIL1 LY6G6C SLC44A4 NEU1 AIF1 SNORA38 APOM LTA LY6G5C HCG23 MIR1236 C2 EHMT2 CLIC1 CYP21A2 MIR6721 PPT2-EGFL8
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss MCCD1 LOC102725068 SNORD117 PRRC2A SAPCD1 MIR6832 GPANK1 MSH5 ABHD16A C6orf48 SNORD84 MICA C4B SNORD52 HCP5 C6orf25 DDX39B-AS1 SKIV2L DDAH2 HCG26 ZBTB12 CFB CSNK2B TNXA SNORD48 C4A HSPA1B SAPCD1-AS1 LOC100287329 ATP6V1G2 NELFE LSM2 NCR3 STK19 VWA7 TNF VARS BAG6 C6orf47 MICB C2-AS1 LY6G5B LST1 MSH5-SAPCD1 LTB LY6G6F DDX39B HSPA1A HSPA1L TNXB LY6G6D LY6G6E CYP21A1P ATP6V1G2-DDX39B MIR4646 DXO NFKBIL1 LY6G6C SLC44A4 NEU1 AIF1 MIR6891 SNORA38 APOM LTA LY6G5C MIR1236 C2 EHMT2 CLIC1 HLA-B CYP21A2
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion SYNGAP1 LOC102725068 RING1 HLA-DMA ZBTB22 SNORD84 SNORD52 C6orf25 TAP1 MIR6833 DDX39B-AS1 GPSM3 LOC100507547 HCG26 HLA-DRB5 HLA-DOA CSNK2B PSMB8-AS1 TNXA PSMB8 SNORD48 RNF5 HSPA1B PBX2 MIR6873 NELFE LSM2 NCR3 STK19 VWA7 NOTCH4 TNF AGPAT1 MICB C2-AS1 LST1 CUTA MSH5-SAPCD1 LTB DDX39B HSPA1A TNXB LY6G6E CYP21A1P DAXX HLA-DRB1 HLA-DRA HCG24 ATP6V1G2-DDX39B ATF6B MIR219A1 MIR4646 SLC39A7 VPS52 BRD2 LY6G6C SLC44A4 HLA-DQB1 NEU1 SNORA38 HLA-DOB HLA-DQA2 HCG25 PHF1 LY6G5C HCG23 MIR1236 C2 EHMT2 CLIC1 CYP21A2 RXRB MIR6721 MCCD1 C6orf10 WDR46 SNORD117 PRRC2A TAP2 SAPCD1 MIR6832 PPT2 FKBPL MIR3135B GPANK1 MSH5 ABHD16A C6orf48 B3GALT4 C4B HCP5 TAPBP HLA-DRB6 LOC101929163 SKIV2L DDAH2 ZBTB12 CFB MIR6834 HLA-DQB2 C4A HLA-DQA1 SAPCD1-AS1 LOC100287329 HLA-DQB1-AS1 ATP6V1G2 EGFL8 HLA-DMB PSMB9 VARS PFDN6 RPS18 BAG6 C6orf47 RGL2 LY6G5B LY6G6F LOC100294145 HSPA1L BTNL2 LY6G6D AGER KIFC1 PRRT1 DXO ZBTB9 NFKBIL1 MIR5004 HLA-DPB2 HSD17B8 HLA-DPB1 AIF1 COL11A2 APOM HLA-DPA1 LTA PPP1R2P1 PPT2-EGFL8
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion SYNGAP1 LOC102725068 RING1 HLA-DMA ZBTB22 SNORD84 SNORD52 C6orf25 TAP1 MIR6833 DDX39B-AS1 GPSM3 LOC100507547 HCG26 HLA-DRB5 HLA-DOA CSNK2B PSMB8-AS1 TNXA PSMB8 SNORD48 RNF5 HSPA1B PBX2 MIR6873 NELFE LSM2 NCR3 STK19 VWA7 NOTCH4 TNF AGPAT1 MICB C2-AS1 LST1 CUTA MSH5-SAPCD1 LTB DDX39B HSPA1A TNXB LY6G6E CYP21A1P DAXX HLA-DRB1 HLA-DRA HCG24 ATP6V1G2-DDX39B ATF6B MIR219A1 MIR4646 SLC39A7 VPS52 BRD2 LY6G6C SLC44A4 HLA-DQB1 NEU1 SNORA38 HLA-DOB HLA-DQA2 HCG25 PHF1 LY6G5C HCG23 MIR1236 C2 EHMT2 CLIC1 CYP21A2 RXRB MIR6721 MCCD1 C6orf10 WDR46 SNORD117 PRRC2A TAP2 SAPCD1 MIR6832 PPT2 FKBPL MIR3135B GPANK1 MSH5 ABHD16A C6orf48 B3GALT4 C4B HCP5 TAPBP HLA-DRB6 LOC101929163 SKIV2L DDAH2 ZBTB12 CFB MIR6834 HLA-DQB2 C4A HLA-DQA1 SAPCD1-AS1 LOC100287329 HLA-DQB1-AS1 ATP6V1G2 EGFL8 HLA-DMB PSMB9 VARS PFDN6 RPS18 BAG6 C6orf47 RGL2 LY6G5B LY6G6F LOC100294145 HSPA1L BTNL2 LY6G6D AGER KIFC1 PRRT1 DXO ZBTB9 NFKBIL1 MIR5004 HLA-DPB2 HSD17B8 HLA-DPB1 AIF1 COL11A2 APOM HLA-DPA1 LTA PPP1R2P1 PPT2-EGFL8
nsv830628 Chr.6:31919777 - 31979823 on Build GRCh38 Loss CFB NELFE SKIV2L STK19 C2-AS1 DXO MIR1236 C2
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss MCCD1 C6orf10 LOC102725068 SNORD117 PRRC2A SAPCD1 MIR6832 PPT2 FKBPL GPANK1 MSH5 ABHD16A C6orf48 SNORD84 MICA C4B SNORD52 HCP5 C6orf25 MIR6833 DDX39B-AS1 GPSM3 LOC101929163 SKIV2L DDAH2 LOC100507547 HCG26 ZBTB12 CFB CSNK2B TNXA SNORD48 C4A RNF5 HSPA1B SAPCD1-AS1 PBX2 LOC100287329 ATP6V1G2 EGFL8 NELFE LSM2 NCR3 STK19 VWA7 NOTCH4 TNF VARS BAG6 AGPAT1 C6orf47 MICB C2-AS1 LY6G5B LST1 MSH5-SAPCD1 LTB LY6G6F DDX39B HSPA1A HSPA1L TNXB BTNL2 LY6G6D LY6G6E CYP21A1P AGER HLA-DRA PRRT1 ATP6V1G2-DDX39B ATF6B MIR4646 DXO NFKBIL1 LY6G6C SLC44A4 NEU1 AIF1 MIR6891 SNORA38 APOM LTA LY6G5C HCG23 MIR1236 C2 EHMT2 CLIC1 HLA-B CYP21A2 MIR6721 PPT2-EGFL8
nsv284 Chr.6:31957962 - 32028944 on Build GRCh38 Deletion C4B TNXA NELFE SKIV2L STK19 C4A DXO CYP21A1P

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More Information


Additional Information:

For this assay, SNP(s) [rs11334677] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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