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Gene Symbol
CCHCR1
Assay Reference Genome
Location

Chr.6:31145747 on build GRCh38
Cytoband
6p21.33
Assay ID Hs01492411_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 54535

Gene Name:

 coiled-coil alpha-helical rod protein 1

Gene Aliases:

 C6orf18, HCR, SBP

Location:

 Chr.6:31142439-31158238 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 13 - Exon 13
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CCHCR1 NM_001105563.1 NP_001099033.1
NM_001105564.1 NP_001099034.1
NM_019052.3 NP_061925.2
XM_011514702.2 XP_011513004.1
XM_011514703.1 XP_011513005.1
XM_011514704.2 XP_011513006.1
XM_011514705.1 XP_011513007.1
XM_017010961.1 XP_016866450.1
XM_017010962.1 XP_016866451.1
XM_017010963.1 XP_016866452.1
XM_017010964.1 XP_016866453.1
XM_017010965.1 XP_016866454.1
XM_017010966.1 XP_016866455.1
XM_017010967.1 XP_016866456.1
XM_017010968.1 XP_016866457.1
XM_017010969.1 XP_016866458.1
XM_017010970.1 XP_016866459.1
AA356205.1
AB029331.1 BAA81890.1
AB112474.1 BAD05130.1
AB112475.1 BAD05131.1
AF216493.1 AAF74221.1
AK000204.1 BAA91007.1
AK000217.1 BAA91016.1
AK000533.1 BAA91236.1
AK289446.1
AK295494.1
AK310626.1
AY029160.1 AAK55759.1
BC110534.1 AAI10535.1
BC110535.1 AAI10536.1
CR457227.1 CAG33508.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv525933 Chr.6:31113428 - 31174468 on Build GRCh38 Loss POU5F1 PSORS1C1 CCHCR1 PSORS1C2 PSORS1C3 TCF19 CDSN
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion TUBB MICA OR2H2 GTF2H4 PRR3 PSORS1C1 CCHCR1 LOC554223 RPP21 DHX16 OR12D2 MRPS18B MDC1 C6orf15 MIR4640 MUC22 HLA-C ZNRD1ASP MIR6891 IFITM4P DPCR1 OR2H1 NRM ABCF1 HLA-A GNL1 OR5V1 MDC1-AS1 FLOT1 PSORS1C2 TCF19 HCG18 MIR877 HCG8 TRIM39-RPP21 ZNRD1 MUC21 GABBR1 HLA-E HCG9 OR10C1 PSORS1C3 HLA-G TRIM26 POU5F1 MOG HCG22 OR12D3 ATAT1 VARS2 PPP1R11 TRIM40 OR2J2 HLA-L TRIM39 PPP1R18 HCG17 HCG20 HCG4 TRIM10 OR11A1 DDR1 SFTA2 SNORD32B HLA-K PPP1R10 LOC105375014 LINC00243 OR14J1 TRIM31-AS1 C6orf136 HLA-B RNF39 HLA-H LOC101929006 HLA-F-AS1 ZFP57 HCG27 HCG4B TRIM15 UBD HLA-F CDSN IER3 MAS1L LINC01015 HLA-J TRIM31
nsv601481 Chr.6:30454855 - 31316476 on Build GRCh38 Loss POU5F1 TUBB HCG22 GTF2H4 ATAT1 PRR3 PSORS1C1 VARS2 CCHCR1 PPP1R18 HCG20 DHX16 MRPS18B MDC1 C6orf15 MIR4640 MUC22 DDR1 HLA-C SFTA2 PPP1R10 DPCR1 NRM ABCF1 LOC105375014 LINC00243 GNL1 C6orf136 MDC1-AS1 FLOT1 PSORS1C2 TCF19 MIR877 HCG27 MUC21 HLA-E PSORS1C3 CDSN IER3
nsv428140 Chr.6:31060513 - 31494329 on Build GRCh38 Gain+Loss POU5F1 MICA PSORS1C1 LOC102725068 HLA-B CCHCR1 HCG26 PSORS1C2 TCF19 HCG27 C6orf15 HLA-C MIR6891 HCP5 PSORS1C3 CDSN
nsv524061 Chr.6:31139310 - 31166166 on Build GRCh38 Loss POU5F1 PSORS1C1 CCHCR1 PSORS1C2 TCF19
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion LINC01623 TUBB OR2H2 GTF2H4 PRR3 PSORS1C1 CCHCR1 LOC554223 RPP21 DHX16 OR12D2 MRPS18B MDC1 C6orf15 MIR4640 MUC22 ZNRD1ASP IFITM4P OR2B3 DPCR1 OR2H1 NRM ABCF1 LINC00533 HLA-A GNL1 OR5V1 MDC1-AS1 FLOT1 PSORS1C2 TCF19 HCG18 MIR877 HCG8 TRIM39-RPP21 ZNF311 ZNRD1 MUC21 GABBR1 HLA-E HCG9 OR10C1 TRIM27 LOC100129636 PSORS1C3 HLA-G TRIM26 OR2J3 POU5F1 MOG HCG22 OR12D3 ATAT1 HCG14 VARS2 LINC01556 PPP1R11 OR2W1 TRIM40 OR2J2 HLA-L TRIM39 PPP1R18 HCG17 HCG20 HCG4 TRIM10 OR11A1 DDR1 SFTA2 SNORD32B HLA-K PPP1R10 LOC105375014 LINC00243 OR14J1 TRIM31-AS1 C6orf136 RNF39 HLA-H HCG16 LOC101929006 HLA-F-AS1 ZFP57 HCG27 HCG4B TRIM15 UBD HLA-F CDSN IER3 MAS1L LINC01015 HLA-J TRIM31
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion TUBB GTF2H4 PRR3 PSORS1C1 CCHCR1 LOC554223 RPP21 DHX16 MRPS18B MDC1 C6orf15 MIR4640 MUC22 HLA-C ZNRD1ASP IFITM4P DPCR1 NRM ABCF1 HLA-A GNL1 MDC1-AS1 FLOT1 PSORS1C2 TCF19 HCG18 MIR877 HCG8 TRIM39-RPP21 ZNRD1 MUC21 HLA-E HCG9 PSORS1C3 HLA-G TRIM26 POU5F1 HCG22 ATAT1 VARS2 PPP1R11 TRIM40 HLA-L TRIM39 PPP1R18 HCG17 HCG20 HCG4 TRIM10 DDR1 SFTA2 HLA-K PPP1R10 LOC105375014 LINC00243 TRIM31-AS1 C6orf136 RNF39 HLA-H HLA-F-AS1 HCG27 HCG4B TRIM15 HLA-F CDSN IER3 HLA-J TRIM31
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss TUBB GTF2H4 PRR3 PSORS1C1 CCHCR1 RPP21 DHX16 MRPS18B MDC1 C6orf15 MIR4640 MUC22 HLA-C ZNRD1ASP DPCR1 NRM ABCF1 HLA-A GNL1 MDC1-AS1 FLOT1 PSORS1C2 TCF19 HCG18 MIR877 HCG8 TRIM39-RPP21 ZNRD1 MUC21 HLA-E HCG9 PSORS1C3 TRIM26 POU5F1 HCG22 ATAT1 VARS2 PPP1R11 TRIM40 HLA-L TRIM39 PPP1R18 HCG17 HCG20 TRIM10 DDR1 SFTA2 HLA-K PPP1R10 LOC105375014 LINC00243 TRIM31-AS1 C6orf136 RNF39 HLA-H HCG27 HCG4B TRIM15 CDSN IER3 HLA-J TRIM31
esv2731791 Chr.6:30404802 - 31346410 on Build GRCh38 Deletion POU5F1 TUBB HCG22 GTF2H4 ATAT1 PRR3 PSORS1C1 VARS2 CCHCR1 PPP1R18 HCG20 DHX16 MRPS18B MDC1 C6orf15 MIR4640 MUC22 DDR1 HLA-C SFTA2 PPP1R10 DPCR1 NRM ABCF1 LOC105375014 LINC00243 GNL1 C6orf136 MDC1-AS1 FLOT1 PSORS1C2 TCF19 MIR877 HCG27 MUC21 HLA-E PSORS1C3 CDSN IER3
dgv1174e214 Chr.6:31139843 - 31176217 on Build GRCh38 Gain POU5F1 PSORS1C1 CCHCR1 PSORS1C3 TCF19
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication TUBB MICA GTF2H4 PRR3 PSORS1C1 CCHCR1 RPP21 DHX16 MRPS18B MDC1 C6orf15 MIR4640 MUC22 HLA-C ZNRD1ASP MIR6891 DPCR1 NRM ABCF1 GNL1 MDC1-AS1 FLOT1 PSORS1C2 TCF19 HCG18 MIR877 HCG8 TRIM39-RPP21 ZNRD1 MUC21 HLA-E HCP5 PSORS1C3 TRIM26 POU5F1 HCG22 ATAT1 LOC102725068 VARS2 PPP1R11 TRIM40 HLA-L TRIM39 PPP1R18 HCG17 HCG20 TRIM10 DDR1 SFTA2 PPP1R10 LOC105375014 LINC00243 TRIM31-AS1 C6orf136 HLA-B RNF39 HCG26 HCG27 TRIM15 CDSN IER3 HLA-J TRIM31

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s)


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