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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1541913 on build GRCh38
Cytoband
1p36.33
Assay ID Hs01508955_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 5 1063 NP_054907.1
AF161530.1 5 803 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 5 851 CAC81713.1
AK001809.1 5 811 BAA91921.1
AK127149.1 3 1999
BC008070.2 5 1011 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss ATAD3B ANKRD65 ATAD3C TMEM240 VWA1 TMEM88B LOC102724312 LOC107985729 SSU72 ATAD3A
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss ATAD3B LINC01342 ANKRD65 LINC00115 NADK SSU72 SLC35E2B SDF4 PERM1 LINC01128 LOC100130417 SAMD11 LOC148413 CPSF3L AGRN MIR200B UBE2J2 TTLL10-AS1 ATAD3A HES4 C1orf159 TNFRSF4 FAM41C ISG15 LOC284600 MIR6808 LOC105378948 TTLL10 MRPL20 PUSL1 ATAD3C VWA1 KLHL17 MMP23B PLEKHN1 RNF223 FNDC10 ACAP3 LOC100288069 FAM132A CCNL2 MIR6726 SCNN1D NOC2L LOC107985728 MMP23A MXRA8 DVL1 MIR200A FAM87B MIB2 AURKAIP1 TAS1R3 B3GALT6 TMEM88B LOC102724312 LOC107985729 SLC35E2 CPTP CDK11B MIR429 CDK11A LOC100288175 TMEM240 MIR6727 TNFRSF18 LOC100287934
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss ATAD3B ANKRD65 LOC100132287 SLC35E2B PERM1 SAMD11 LOC105378592 LOC105378591 CPSF3L AGRN MIR6859-2 UBE2J2 C1orf159 LOC100133331 CFAP74 CALML6 SKI TNFRSF4 FAM41C ISG15 GNB1 MIR6808 LOC105378948 PUSL1 ATAD3C FAAP20 KLHL17 MMP23B PLEKHN1 FNDC10 ACAP3 PRKCZ LOC100288069 MIR6726 NOC2L LOC107985728 MIR200A LOC102725121 LOC100506504 TMEM52 TAS1R3 LOC102724312 LOC107984841 CDK11B CDK11A WASH7P LOC100288175 TNFRSF18 LINC01342 LINC00115 NADK SSU72 MTND2P28 SDF4 LINC01128 LOC100130417 LOC148413 LOC101928626 MIR200B OR4F29 TTLL10-AS1 ATAD3A HES4 MTND1P23 LOC100134822 MIR6723 MIR6859-1 LOC284600 TTLL10 MRPL20 VWA1 MIR1302-2 RNF223 GABRD LOC100129534 FAM132A CCNL2 FAM138A SCNN1D MMP23A MXRA8 LOC729737 DVL1 OR4F5 FAM87B MIB2 AURKAIP1 B3GALT6 TMEM88B LOC105378947 LOC107985729 SLC35E2 CPTP OR4F16 LOC105378589 MIR429 TMEM240 LOC105378949 MORN1 MIR6727 LOC100287934 DDX11L1
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion ATAD3B LINC01342 ANKRD65 FNDC10 SSU72 ACAP3 SDF4 FAM132A CCNL2 MIR6726 LOC148413 SCNN1D CPSF3L MXRA8 DVL1 MIR200A MIR200B MIB2 UBE2J2 TTLL10-AS1 ATAD3A C1orf159 AURKAIP1 TAS1R3 B3GALT6 TNFRSF4 TMEM88B LOC102724312 LOC107985729 CPTP CDK11B MIR6808 MIR429 TTLL10 MRPL20 PUSL1 ATAD3C TMEM240 VWA1 MMP23B MIR6727 TNFRSF18
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain ATAD3B ANKRD65 TMEM88B LOC102724312 LOC107985729 SSU72 CCNL2 MRPL20 LOC148413 ATAD3C TMEM240 VWA1 ATAD3A
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss ATAD3B ANKRD65 NADK FNDC10 GABRD SSU72 SLC35E2B PRKCZ CCNL2 LOC148413 LOC105378591 MMP23A MIB2 ATAD3A CFAP74 CALML6 TMEM52 TMEM88B LOC102724312 LOC107985729 SLC35E2 CDK11B GNB1 LOC105378589 CDK11A MRPL20 ATAD3C TMEM240 LOC105378949 VWA1 MMP23B

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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