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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1541913 on build GRCh38
Cytoband
1p36.33
Assay ID Hs01508955_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 5 1063 NP_054907.1
AF161530.1 5 803 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 5 851 CAC81713.1
AK001809.1 5 811 BAA91921.1
AK127149.1 3 1999
BC008070.2 5 1011 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss LOC102724312 TMEM240 ATAD3C TMEM88B ATAD3B LOC107985729 ANKRD65 VWA1 ATAD3A SSU72
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC100130417 HES4 TNFRSF4 MIR429 LOC107985729 LOC100288069 LINC01342 KLHL17 NOC2L AURKAIP1 CDK11B FAM87B CDK11A SLC35E2B LOC100287934 TAS1R3 MIR6727 ATAD3C B3GALT6 TNFRSF18 MIR6808 CPSF3L SLC35E2 CCNL2 MMP23B LOC107985728 LOC284600 MMP23A PUSL1 SCNN1D MIR6726 DVL1 LOC102724312 MRPL20 NADK ISG15 LINC01128 MIB2 MIR200A FAM132A ATAD3B LOC148413 RNF223 ATAD3A TMEM240 LINC00115 AGRN MIR200B ACAP3 FAM41C LOC105378948 ANKRD65 PLEKHN1 SSU72 SAMD11 TTLL10 TTLL10-AS1 UBE2J2 SDF4 C1orf159 TMEM88B MXRA8 LOC100288175 PERM1 FNDC10 CPTP VWA1
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss FAM138A LOC100133331 TNFRSF4 MIR429 LOC107985729 LINC01342 NOC2L AURKAIP1 GNB1 MIR6859-2 B3GALT6 TNFRSF18 MIR6808 LOC105378591 LOC100506504 LOC100134822 CFAP74 SLC35E2 CCNL2 MORN1 MMP23B OR4F16 PUSL1 MIR1302-2 DVL1 LOC102724312 GABRD SKI OR4F5 ISG15 LINC01128 LOC100132287 MIB2 FAM132A LOC148413 MIR6723 ATAD3A TMEM240 WASH7P MTND1P23 SSU72 SAMD11 UBE2J2 OR4F29 LOC102725121 MTND2P28 TMEM88B PERM1 FNDC10 VWA1 LOC100130417 HES4 CALML6 LOC100129534 LOC107984841 LOC100288069 KLHL17 CDK11B FAM87B CDK11A SLC35E2B LOC100287934 TAS1R3 MIR6727 ATAD3C CPSF3L LOC101928626 LOC107985728 LOC284600 MMP23A MIR6859-1 SCNN1D MIR6726 TMEM52 MRPL20 NADK FAAP20 LOC105378589 MIR200A PRKCZ LOC729737 LOC105378947 ATAD3B RNF223 LINC00115 AGRN MIR200B ACAP3 FAM41C LOC105378948 ANKRD65 PLEKHN1 TTLL10 LOC105378949 TTLL10-AS1 SDF4 C1orf159 MXRA8 LOC100288175 DDX11L1 CPTP LOC105378592
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion LOC102724312 MRPL20 TNFRSF4 MIR429 LOC107985729 MIB2 MIR200A LINC01342 FAM132A ATAD3B LOC148413 AURKAIP1 CDK11B ATAD3A TMEM240 TAS1R3 MIR6727 ATAD3C B3GALT6 MIR200B ACAP3 TNFRSF18 MIR6808 ANKRD65 CPSF3L SSU72 CCNL2 TTLL10 TTLL10-AS1 UBE2J2 SDF4 MMP23B C1orf159 TMEM88B PUSL1 MXRA8 SCNN1D MIR6726 FNDC10 CPTP VWA1 DVL1
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain LOC102724312 TMEM240 ATAD3C MRPL20 LOC107985729 ANKRD65 SSU72 CCNL2 TMEM88B ATAD3B LOC148413 VWA1 ATAD3A
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss LOC102724312 GABRD MRPL20 CALML6 NADK LOC107985729 MIB2 LOC105378589 PRKCZ ATAD3B LOC148413 CDK11B ATAD3A CDK11A TMEM240 GNB1 SLC35E2B ATAD3C LOC105378591 ANKRD65 CFAP74 SSU72 SLC35E2 CCNL2 LOC105378949 MMP23B MMP23A TMEM88B FNDC10 VWA1 TMEM52

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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