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See other VSTM1 CNV Assays ›
Gene Symbol
VSTM1
Assay Reference Genome
Location

Chr.19:54040897 on build GRCh38
Cytoband
19q13.42
Assay ID Hs01545390_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 284415

Gene Name:

 V-set and transmembrane domain containing 1

Gene Aliases:

 SIRL-1, SIRL1, UNQ3033

Location:

 Chr.19:54040825-54063966 on Build GRCh38

Assay Gene Location:

 Within Exon 13
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
VSTM1 NM_001288791.1 9 742 NP_001275720.1
NM_001288792.1 8 858 NP_001275721.1
NM_001288793.1 6 591 NP_001275722.1
NM_198481.3 9 951 NP_940883.2
NR_110142.1 10 1040
XM_011526845.1 10 1348 XP_011525147.1
XM_011526846.1 10 1258 XP_011525148.1
XM_011526847.1 11 1326 XP_011525149.1
XM_011526848.1 9 1165 XP_011525150.1
XM_011526849.1 9 1054 XP_011525151.1
AI457604.1 1 84
AY358542.1 9 960 AAQ88906.1
BC100943.2 8 835 AAI00944.1
BG189223.1 5 390
BQ446114.1 1 82
DQ479397.1
FJ584316.1
FJ584317.1
FJ584318.1
FJ584319.1
FJ584320.1
FJ882051.1
FN398145.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv458782 Chr.19:53961144 - 54093354 on Build GRCh38 Gain TARM1 CACNG6 MIR935 VSTM1 CACNG8
nsv510773 Chr.19:54017180 - 54132236 on Build GRCh38 Deletion TARM1 PRPF31 VSTM1 OSCAR NDUFA3 TFPT
nsv1063127 Chr.19:53926876 - 54068977 on Build GRCh38 Gain CACNG6 MIR935 VSTM1 CACNG8 CACNG7
nsv1057516 Chr.19:53986233 - 54046901 on Build GRCh38 Gain CACNG6 VSTM1 CACNG8
esv2718812 Chr.19:53184636 - 54322450 on Build GRCh38 Deletion MIR518D MIR519A1 MIR526A2 CNOT3 MIR527 MIR520H PRPF31 LILRB3 ZNF677 TARM1 MIR522 LOC284379 MIR526A1 MIR520G MBOAT7 MIR517B LILRB5 FAM90A27P LILRB2 ZNF761 CACNG7 ZNF665 MIR519B MIR523 MIR372 MIR520B MIR518E LENG1 MIR1283-2 ZNF765 MIR518B VSTM1 TSEN34 OSCAR MIR1323 TFPT MIR517A TMC4 LILRA6 TPM3P9 MIR516B1 MIR512-1 MIR519E ZNF818P MIR519D MIR521-1 MIR516B2 MIR518A1 MIR371B BIRC8 RPS9 CACNG8 NDUFA3 MIR1283-1 MIR515-2 VN1R4 VN1R2 CACNG6 MIR520C PRKCG ZNF845 MIR935 MIR516A2 MIR498 MIR525 MIR371A MIR518F MIR517C MIR516A1 LOC105372457 ZNF331 DPRX MYADM MIR526B NLRP12 MIR520F ZNF525 MIR520D MIR519A2 ZNF813 MIR524 MIR4752 MIR515-1 MIR512-2 MIR520E MIR521-2 LILRA5 MIR519C MIR373 MIR520A MIR518C MIR518A2
nsv833877 Chr.19:53951529 - 54117323 on Build GRCh38 Loss TARM1 CACNG6 MIR935 PRPF31 VSTM1 CACNG8 OSCAR NDUFA3 TFPT
nsv820269 Chr.19:54040652 - 54041356 on Build GRCh38 Gain VSTM1

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More Information


Additional Information:

For this assay, SNP(s) [rs200587635,rs369366127] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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