Hs01552775_cn

• Gene Symbol: TRAPPC2L
• Assay Reference Genome Location: Chr.16:88858670 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 51693
• Gene Name: trafficking protein particle complex 2-like
• Gene Aliases: HSPC176
• Location: Chr.16:88856220-88862686 on Build GRCh38
• Assay Gene Location: Overlaps Intron 2 - Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TRAPPC2L	NM_001318524.1			NP_001305453.1
	NM_001318525.1			NP_001305454.1
	NM_001318526.1			NP_001305455.1
	NM_001318527.1			NP_001305456.1
	NM_001318528.1			NP_001305457.1
	NM_001318529.1			NP_001305458.1
	NM_001318530.1			NP_001305459.1
	NM_001318532.1			NP_001305461.1
	NM_016209.4			NP_057293.1
	NR_134670.1
	NR_134671.1
	XM_017023270.1			XP_016878759.1
	AF089106.1			AAF00568.1
	AF161524.1			AAF29139.1
	AK126779.1			BAC86686.1
	AK307253.1
	AK310805.1
	AK311885.1
	AX771012.1			CAE01175.1
	AX771013.1			CAE01176.1
	AX771014.1			CAE01177.1
	BC011369.1			AAH11369.1
	BC018024.1			AAH18024.1
	BC105809.1			AAI05810.1
	BG283878.1
	BI754306.1
	BX340702.2
	BX384775.2
	BX419849.2
	DA209193.1
	DA293122.1
	DA295904.1
	DA833474.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv37n68	Chr.16:88767460 - 88944903 on Build GRCh38	Loss	APRT LOC107987238 TRAPPC2L CBFA2T3 LOC100129697 LOC105371409 PIEZO1 GALNS PABPN1L LOC101927793 CDT1
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	APRT CDH15 CBFA2T3 LOC100129697 LOC105371409 CTU2 GALNS ACSF3 LOC101927793 LOC400558 CDT1 LINC00304 SLC22A31 LOC107987238 TRAPPC2L LOC100289580 PIEZO1 ZNF778 PABPN1L LOC339059 MIR4722
nsv471115	Chr.16:88801844 - 89197442 on Build GRCh38	Loss	APRT CDH15 CBFA2T3 LOC100129697 LOC105371409 GALNS ACSF3 LOC101927793 LOC400558 CDT1 LINC00304 SLC22A31 LOC107987238 TRAPPC2L PABPN1L
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	APRT CDH15 ANKRD11 CBFA2T3 LOC100129697 LOC105371409 GALNS LOC105371414 ACSF3 LOC101927793 LOC400558 CDT1 LINC00304 SLC22A31 LOC100287036 LOC107987238 TRAPPC2L LOC100289580 PIEZO1 ZNF778 PABPN1L LOC339059
esv3639555	Chr.16:88745961 - 88899576 on Build GRCh38	Gain	APRT LOC107987238 TRAPPC2L CBFA2T3 PIEZO1 GALNS PABPN1L LOC101927793 CDT1
nsv952071	Chr.16:88790893 - 89019992 on Build GRCh38	Deletion	APRT LOC107987238 TRAPPC2L CBFA2T3 LOC100129697 LOC105371409 GALNS PABPN1L LOC101927793 CDT1
nsv521217	Chr.16:88805821 - 89174375 on Build GRCh38	Loss	APRT CDH15 CBFA2T3 LOC100129697 LOC105371409 GALNS ACSF3 LOC101927793 LOC400558 CDT1 LINC00304 LOC107987238 TRAPPC2L PABPN1L
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	PRDM7 CBFA2T3 TCF25 AFG3L1P LOC101927793 VPS9D1-AS1 ZNF276 SNAI3-AS1 SPATA33 APRT LOC105371419 GALNS CHMP1A LOC105371414 ACSF3 CPNE7 CDT1 LOC107984817 LINC00304 MC1R URAHP PIEZO1 SPATA2L TUBB8P7 LOC339059 SNORD68 FANCA CTU2 DBNDD1 CDK10 LOC400558 FAM157C SLC22A31 LOC100287036 TRAPPC2L LOC100289580 PABPN1L VPS9D1 SPIRE2 CYBA CDH15 ANKRD11 LOC101927817 LOC100129697 LOC105371409 GAS8-AS1 SNAI3 DEF8 SPG7 IL17C GAS8 LOC107987238 DPEP1 CENPBD1 ZNF778 TUBB3 RNF166 MVD MIR4722 RPL13
esv3639561	Chr.16:88837996 - 88882065 on Build GRCh38	Gain	TRAPPC2L CBFA2T3 GALNS PABPN1L
nsv1061256	Chr.16:88711587 - 89013365 on Build GRCh38	Gain	APRT CBFA2T3 LOC100129697 LOC105371409 CTU2 GALNS LOC101927793 CDT1 LOC107987238 TRAPPC2L LOC100289580 PIEZO1 PABPN1L LOC339059 MIR4722
nsv1063441	Chr.16:88767066 - 88861882 on Build GRCh38	Loss	APRT LOC107987238 TRAPPC2L PIEZO1 GALNS CDT1

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

membrane traffic protein