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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2180239 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01586629_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Exon 18
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 18 3161 NP_065815.1
AB037727.1 10 2298 BAA92544.1
AF451977.1 18 3227 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication WDR24 IFT140 C1QTNF8 JMJD8 SNRNP25 HBA2 MEIOB SOX8 NDUFB10 ZNF598 SLC9A3R2 ATP6V0C MIR662 TBC1D24 NTHL1 DECR2 DNASE1L2 ARHGDIG CEMP1 MSRB1 NTN3 ABCA3 LOC729652 PKD1 SNORA10 RAB26 TELO2 RGS11 RPUSD1 MIR3178 TSC2 LMF1-AS1 PTX4 METTL26 RHOT2 LOC652276 LUC7L SPSB3 GNG13 PIGQ LOC106660606 RAB40C MIR6768 E4F1 WDR90 HBA1 LOC105371045 DDX11L10 CCDC154 C16orf59 HAGHL CLCN7 UNKL CCNF MRPL28 SNORA64 NPRL3 MIR3177 FAM173A NUBP2 UBE2I FLJ42627 HBZ CCDC78 LOC101929280 LOC105371184 MPG SNORA78 LMF1 SNORD60 TSR3 LINC00235 AMDHD2 MRPS34 ECI1 MAPK8IP3 TPSG1 EME2 CASKIN1 MIR4717 NOXO1 SYNGR3 RHBDL1 BAIAP3 RHBDF1 CHTF18 MIR5587 HN1L NPW ERVK13-1 RPL3L HAGH SNHG9 NME4 SSTR5 TBL3 FAM234A RNPS1 MSLN TPSB2 HBQ1 HS3ST6 CRAMP1 MIR6767 NHLRC4 STUB1 MIR6511B1 MIR3677 MLST8 LOC105371046 LOC100134368 MIR1225 MIR4516 RPL23AP5 AXIN1 METRN PDPK1 FBXL16 IGFALS GFER LOC100287175 CACNA1H RPS2 TRAF7 SNHG19 ABCA17P PRR25 LOC105371047 PDIA2 PRSS29P TMEM8A LOC105371038 LINC00254 MCRIP2 MIR3180-5 MIR940 LOC105371049 KCTD5 PRR35 GNPTG PGP RAB11FIP3 LOC107987233 NARFL FAHD1 TPSD1 CAPN15 HBM LOC107984876 WFIKKN1 POLR3K PRSS27 BRICD5 MIR6859-4 C16orf91 TMEM204 NME3 SSTR5-AS1 WASIR2 RNF151 TPSAB1 MIR3176
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss TRAF7 SNHG19 ZNF598 TBL3 SLC9A3R2 MIR3180-5 MIR940 SNORD60 RNPS1 LOC105371049 NTHL1 DNASE1L2 PGP ABCA3 ECI1 PKD1 RAB26 CASKIN1 MIR6511B1 MIR4717 MIR3677 NOXO1 TSC2 MLST8 SYNGR3 MIR1225 MIR4516 BRICD5 LOC106660606 GFER E4F1 NPW
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss TRAF7 SNHG19 CASKIN1 MIR6511B1 TSC2 MLST8 MIR1225 MIR4516 BRICD5 MIR3180-5 SNORD60 LOC105371049 E4F1 DNASE1L2 PGP ECI1 PKD1 RAB26
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss TRAF7 SNHG19 CASKIN1 MIR3677 MLST8 BRICD5 MIR940 SNORD60 RNPS1 LOC106660606 E4F1 DNASE1L2 PGP ECI1 RAB26
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss MIR3180-5 TRAF7 SNORD60 SNHG19 CASKIN1 LOC105371049 MIR6511B1 TSC2 MIR1225 MIR4516 PKD1 RAB26
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain TRAF7 CASKIN1
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss BRICD5 MIR940 TRAF7 RNPS1 LOC106660606 CASKIN1 MIR3677 MLST8 E4F1 DNASE1L2 PGP ECI1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain TRAF7 SNHG19 ABCA17P ATP6V0C MIR3180-5 MIR940 SNORD60 RNPS1 LOC105371049 TBC1D24 AMDHD2 DNASE1L2 CEMP1 PGP NTN3 ABCA3 LOC729652 ECI1 PKD1 RAB26 MIR6767 MIR3178 CASKIN1 MIR6511B1 MIR4717 MIR3677 TSC2 MLST8 MIR1225 LOC652276 MIR4516 BRICD5 PDPK1 LOC106660606 MIR6768 E4F1 C16orf59 CCNF
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion TRAF7 SNHG19 CASKIN1 MIR4717 MIR3677 MLST8 BRICD5 MIR940 SNORD60 RNPS1 LOC106660606 E4F1 DNASE1L2 PGP ABCA3 ECI1 RAB26

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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