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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2180239 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01586629_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Exon 18
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 18 3161 NP_065815.1
AB037727.1 10 2298 BAA92544.1
AF451977.1 18 3227 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication HBQ1 NTHL1 WDR24 SLC9A3R2 SSTR5 RGS11 NARFL RPS2 PGP LOC100134368 RHBDF1 MPG IFT140 GNG13 RPUSD1 METTL26 NME4 PKD1 ECI1 PDIA2 POLR3K SNORA78 C1QTNF8 SNRNP25 C16orf91 C16orf59 MLST8 LOC105371184 NHLRC4 DECR2 MIR4717 LOC105371046 ATP6V0C WDR90 SYNGR3 MSLN CCDC154 AXIN1 SOX8 TMEM204 E4F1 LINC00235 UBE2I LOC105371047 WASIR2 LOC107987233 ZNF598 MIR3180-5 LINC00254 SNORD60 LMF1 HAGHL MIR6859-4 TBL3 LOC100287175 EME2 DNASE1L2 FLJ42627 LMF1-AS1 GFER SPSB3 LOC105371038 LOC652276 MIR5587 NPRL3 CACNA1H TSC2 RHOT2 HBM CCDC78 TSR3 RAB11FIP3 PTX4 CRAMP1 FAM173A MIR3178 MAPK8IP3 METRN JMJD8 HAGH KCTD5 FAHD1 TELO2 NME3 CHTF18 PRSS29P HBA1 HBA2 PRSS27 RPL3L TBC1D24 CAPN15 WFIKKN1 TPSB2 LOC107984876 ERVK13-1 TRAF7 CCNF TPSG1 DDX11L10 HBZ MIR3677 NTN3 MIR662 MIR6767 MIR6768 SSTR5-AS1 MRPL28 MCRIP2 LOC101929280 MSRB1 SNORA10 BRICD5 PRR25 AMDHD2 FAM234A PRR35 ARHGDIG NOXO1 MIR4516 FBXL16 NDUFB10 RHBDL1 HN1L LOC105371049 CLCN7 IGFALS GNPTG TPSD1 NUBP2 SNHG19 CASKIN1 HS3ST6 MIR1225 NPW PIGQ CEMP1 LOC106660606 BAIAP3 STUB1 MIR3176 TPSAB1 UNKL SNORA64 RPL23AP5 MIR6511B1 MEIOB RNF151 RNPS1 RAB40C PDPK1 LOC105371045 TMEM8A MIR940 MRPS34 LUC7L LOC729652 RAB26 ABCA17P ABCA3 SNHG9 MIR3177
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss NTHL1 ZNF598 SLC9A3R2 MIR3180-5 LOC105371049 SNORD60 PGP TBL3 DNASE1L2 SNHG19 CASKIN1 PKD1 MIR1225 ECI1 GFER NPW TRAF7 MIR6511B1 TSC2 RNPS1 MLST8 SYNGR3 BRICD5 E4F1 RAB26 NOXO1 MIR4516
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss MLST8 MIR3180-5 LOC105371049 SNORD60 PGP DNASE1L2 BRICD5 SNHG19 CASKIN1 E4F1 PKD1 MIR1225 ECI1 RAB26 TRAF7 MIR4516 MIR6511B1 TSC2
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss RNPS1 MLST8 SNORD60 PGP DNASE1L2 MIR940 BRICD5 SNHG19 CASKIN1 E4F1 ECI1 RAB26 TRAF7 LOC106660606 MIR3677
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss SNHG19 CASKIN1 MIR3180-5 LOC105371049 PKD1 MIR1225 RAB26 SNORD60 TRAF7 MIR4516 MIR6511B1 TSC2
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain CASKIN1 TRAF7
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR3180-5 LOC105371049 SNORD60 PGP TBC1D24 DNASE1L2 SNHG19 CASKIN1 PKD1 MIR1225 ECI1 TRAF7 CEMP1 LOC106660606 LOC652276 CCNF MIR6511B1 TSC2 MIR3677 NTN3 C16orf59 RNPS1 MLST8 MIR6767 MIR6768 MIR4717 ATP6V0C PDPK1 MIR3178 MIR940 BRICD5 LOC729652 E4F1 AMDHD2 RAB26 ABCA17P ABCA3 MIR4516
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss MIR940 BRICD5 RNPS1 CASKIN1 MLST8 E4F1 ECI1 PGP TRAF7 LOC106660606 DNASE1L2 MIR3677
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion RNPS1 MLST8 SNORD60 PGP MIR4717 DNASE1L2 MIR940 BRICD5 SNHG19 CASKIN1 E4F1 ECI1 RAB26 TRAF7 ABCA3 LOC106660606 MIR3677

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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