Hs01591205_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54063769 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Overlaps Intron 1 - Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv458782	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	MIR935 CACNG8 CACNG6 TARM1 VSTM1
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	OSCAR TFPT NDUFA3 TARM1 PRPF31 VSTM1
nsv182	Chr.19:54050737 - 54097924 on Build GRCh38	Deletion	OSCAR TARM1 VSTM1
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	MIR935 CACNG8 CACNG6 VSTM1 CACNG7
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	CNOT3 LILRA6 MIR518E ZNF845 MIR518F MIR525 MIR518B MIR4752 MIR522 MIR520B MIR519D MIR521-1 FAM90A27P MIR371B ZNF818P TARM1 PRPF31 TSEN34 MIR519A1 MIR527 MIR516B1 ZNF813 MIR935 LOC105372457 MIR520C MIR517C ZNF665 MIR516A2 VN1R2 NDUFA3 MIR518A1 MIR520H LILRB2 NLRP12 MIR1323 RPS9 ZNF331 MIR524 MIR526A1 DPRX MIR512-1 MIR519C MIR515-1 CACNG8 LILRA5 MIR373 VN1R4 MIR516A1 MIR520F LILRB5 MIR1283-2 MIR526A2 MIR498 TFPT MIR515-2 MIR1283-1 MYADM BIRC8 MIR517A MIR519B ZNF761 MIR526B MIR518A2 ZNF677 MIR518D OSCAR MIR372 LENG1 MIR371A MIR520E MIR519E MIR520D ZNF525 MIR520A MBOAT7 ZNF765 VSTM1 MIR521-2 LILRB3 TMC4 TPM3P9 MIR523 MIR517B MIR512-2 MIR516B2 MIR520G CACNG6 PRKCG LOC284379 MIR518C MIR519A2 CACNG7
esv3644780	Chr.19:54057724 - 54066399 on Build GRCh38	Gain	VSTM1
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	MIR935 OSCAR TFPT CACNG8 CACNG6 NDUFA3 TARM1 PRPF31 VSTM1

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity