accessibility menu, dialog, popup

UserName
Viewing profile as user:

Please enter the information below and press OK to send your cart to Core Services for purchase.

    

System Message

OKCancel
LOADING ...
See other RPUSD1 CNV Assays ›
Gene Symbol
RPUSD1
Assay Reference Genome
Location

Chr.16:785330 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01593806_cn
Size
Availability Made To Order
Catalog # 4400291
Price
Your Price
Online offer:
Check your price ›

Assay Details

Target Gene Details

Entrez Gene ID:

 113000

Gene Name:

 RNA pseudouridylate synthase domain containing 1

Gene Aliases:

 C16orf40, RLUCL

Location:

 Chr.16:784974-788383 on Build GRCh38

Assay Gene Location:

 Within Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RPUSD1 NM_001324086.1 6 1703 NP_001311015.1
NM_001324410.1 6 1604 NP_001311339.1
NM_001324411.1 5 1591 NP_001311340.1
NM_001324412.1 5 1505 NP_001311341.1
NM_001324413.1 6 1595 NP_001311342.1
NM_001324414.1 6 1651 NP_001311343.1
NM_001324415.1 6 1704 NP_001311344.1
NM_058192.2 6 1694 NP_478072.1
BC011783.2 5 1559 AAH11783.1
BC012951.2 2 1194 AAH12951.2
CB529100.1 1 374

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4828n54 Chr.16:760143 - 828324 on Build GRCh38 Gain CHTF18 PRR25 MSLN GNG13 MIR662 RPUSD1
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain CHTF18 PRR25 MSLN GNG13 MIR662 RPUSD1
nsv817712 Chr.16:774098 - 810673 on Build GRCh38 Loss CHTF18 PRR25 GNG13 RPUSD1
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MIR1225 SOX8 NUBP2 CLCN7 TPSAB1 ABCA3 UBE2I GNG13 LOC100134368 LMF1-AS1 LOC105371046 TELO2 C16orf91 FAHD1 MIR6859-4 PRR25 METTL26 LOC106660606 HBZ PRSS27 LOC105371184 NPRL3 ABCA17P CACNA1H MIR3677 LOC652276 IFT140 LINC00235 C1QTNF8 JMJD8 TRAF7 SNORA78 RNPS1 METRN HAGHL MIR3180-5 GNPTG RAB11FIP3 RAB40C CRAMP1 EME2 DDX11L10 STUB1 LOC100287175 LOC729652 CASKIN1 MIR3177 FLJ42627 SNORD60 SNRNP25 LUC7L SYNGR3 HBA1 WDR90 KCTD5 NTN3 LOC107984876 SSTR5-AS1 SSTR5 MLST8 RGS11 NME4 MSLN MSRB1 MRPL28 WFIKKN1 NPW SNORA10 SNHG19 SNHG9 HN1L LOC105371047 NARFL NTHL1 TBL3 LMF1 MRPS34 MIR6767 MIR3176 LOC105371045 SLC9A3R2 MIR6511B1 AXIN1 PDIA2 PTX4 MIR5587 MIR3178 NOXO1 ERVK13-1 PGP TMEM8A WASIR2 ARHGDIG NME3 CCDC78 CCDC154 LOC105371038 PIGQ TBC1D24 PKD1 LOC105371049 LOC107987233 PDPK1 RHBDL1 WDR24 RPUSD1 MIR4516 PRSS29P HBQ1 C16orf59 TPSB2 DECR2 FAM173A RPL23AP5 BAIAP3 POLR3K HBM NHLRC4 LINC00254 MCRIP2 TSR3 FAM234A RHBDF1 PRR35 MEIOB MIR940 SNORA64 CEMP1 TMEM204 LOC101929280 ATP6V0C E4F1 SPSB3 DNASE1L2 CAPN15 RHOT2 HAGH BRICD5 CHTF18 TPSG1 UNKL FBXL16 NDUFB10 MIR4717 AMDHD2 MIR6768 RPL3L HS3ST6 RNF151 GFER RPS2 TSC2 CCNF ZNF598 MPG TPSD1 HBA2 ECI1 MAPK8IP3 MIR662 IGFALS RAB26
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss MCRIP2 MIR3176 PRR35 MIR5587 GNG13 WDR90 PRR25 LOC101929280 METTL26 CCDC78 LOC105371184 CAPN15 RHOT2 LOC105371038 PIGQ CHTF18 FBXL16 MSLN LOC107987233 LINC00235 WFIKKN1 JMJD8 RHBDL1 METRN WDR24 HAGHL RPUSD1 RAB11FIP3 RAB40C NARFL FAM173A NHLRC4 MIR662 STUB1 LOC100287175
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss CHTF18 MCRIP2 FBXL16 MSLN GNG13 JMJD8 RHBDL1 METRN WDR24 HAGHL RPUSD1 WDR90 NARFL FAM173A CCDC78 MIR662 LOC105371184 STUB1 RHOT2 LOC100287175 LOC105371038
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss MCRIP2 MIR3176 PRR35 MIR5587 GNG13 WDR90 PRR25 LOC101929280 METTL26 CCDC78 LOC105371184 CAPN15 RHOT2 LOC105371038 PIGQ CHTF18 FBXL16 MSLN LOC107987233 LINC00235 WFIKKN1 JMJD8 RHBDL1 METRN WDR24 HAGHL RPUSD1 RAB11FIP3 RAB40C NARFL FAM173A NHLRC4 MIR662 STUB1 LOC100287175
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion SOX8 MCRIP2 MIR3176 PRR35 MIR5587 GNG13 LMF1-AS1 WDR90 PRR25 LOC107984876 SSTR5-AS1 LOC101929280 METTL26 SSTR5 CCDC78 LOC105371184 CAPN15 RHOT2 LOC105371038 PIGQ CHTF18 FBXL16 MSLN LOC107987233 LINC00235 WFIKKN1 C1QTNF8 JMJD8 RHBDL1 METRN WDR24 HAGHL RPUSD1 RAB11FIP3 RAB40C NARFL FAM173A NHLRC4 MIR662 STUB1 LMF1 LOC100287175
nsv571042 Chr.16:785298 - 847566 on Build GRCh38 Loss CHTF18 PRR25 GNG13 RPUSD1
nsv457312 Chr.16:760039 - 797743 on Build GRCh38 Loss CHTF18 MSLN MIR662 RPUSD1
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication MCRIP2 GNG13 WDR90 LOC101929280 METTL26 CCDC78 LOC105371184 RHOT2 LOC105371038 PIGQ CHTF18 FBXL16 MSLN WFIKKN1 JMJD8 RHBDL1 METRN WDR24 HAGHL RPUSD1 RAB40C NARFL FAM173A MIR662 STUB1 LOC100287175
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication MCRIP2 MIR3176 PRR35 MIR5587 GNG13 WDR90 PRR25 LOC101929280 METTL26 CCDC78 LOC105371184 CAPN15 RHOT2 LOC105371038 PIGQ CHTF18 FBXL16 MSLN LOC107987233 LINC00235 WFIKKN1 JMJD8 RHBDL1 METRN WDR24 HAGHL RPUSD1 RAB11FIP3 RAB40C NARFL FAM173A NHLRC4 MIR662 STUB1 LOC100287175

Back To Top

More Information


Additional Information:

For this assay, SNP(s) [rs73491297,rs78620657] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


Back To Top

Related Products