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See other RPUSD1 CNV Assays ›
Gene Symbol
RPUSD1
Assay Reference Genome
Location

Chr.16:785330 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01593806_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 113000

Gene Name:

 RNA pseudouridylate synthase domain containing 1

Gene Aliases:

 C16orf40, RLUCL

Location:

 Chr.16:784974-788383 on Build GRCh38

Assay Gene Location:

 Within Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RPUSD1 NM_001324086.1 6 1703 NP_001311015.1
NM_001324410.1 6 1604 NP_001311339.1
NM_001324411.1 5 1591 NP_001311340.1
NM_001324412.1 5 1505 NP_001311341.1
NM_001324413.1 6 1595 NP_001311342.1
NM_001324414.1 6 1651 NP_001311343.1
NM_001324415.1 6 1704 NP_001311344.1
NM_058192.2 6 1694 NP_478072.1
BC011783.2 5 1559 AAH11783.1
BC012951.2 2 1194 AAH12951.2
CB529100.1 1 374

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4828n54 Chr.16:760143 - 828324 on Build GRCh38 Gain MSLN GNG13 PRR25 RPUSD1 MIR662 CHTF18
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain MSLN GNG13 PRR25 RPUSD1 MIR662 CHTF18
nsv571040 Chr.16:774098 - 797597 on Build GRCh38 Loss RPUSD1 CHTF18
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MIR3177 MRPL28 SNORA78 NUBP2 HBM HAGH GFER METTL26 TPSG1 MSRB1 NPRL3 MIR6859-4 TRAF7 SNRNP25 FLJ42627 WDR90 AMDHD2 WASIR2 GNG13 ERVK13-1 TPSAB1 EME2 SSTR5 MRPS34 LOC652276 MIR3180-5 PRR35 LUC7L SOX8 RPS2 ZNF598 ECI1 MIR6768 LOC100134368 JMJD8 GNPTG LINC00254 ABCA17P SPSB3 CRAMP1 TBL3 CACNA1H NME3 IFT140 TPSD1 SNORD60 MIR940 UBE2I FBXL16 RPL3L MIR5587 LOC105371184 LOC105371045 WDR24 FAM173A HN1L CASKIN1 NTN3 POLR3K C1QTNF8 PDPK1 SNHG9 NHLRC4 RGS11 MSLN RHBDF1 MIR3677 MIR3178 SNORA64 MPG IGFALS TELO2 MIR4717 NPW SYNGR3 LOC105371038 HBQ1 SNHG19 METRN DECR2 PRSS27 MIR4516 RNPS1 BAIAP3 STUB1 ATP6V0C DDX11L10 CCDC78 MIR6767 HBA2 HAGHL RAB11FIP3 RHBDL1 HBZ MCRIP2 TPSB2 RAB40C TSR3 MIR3176 MIR1225 PDIA2 UNKL CCNF LOC106660606 FAHD1 MAPK8IP3 MEIOB C16orf91 E4F1 NOXO1 BRICD5 LMF1 RNF151 HS3ST6 PRR25 KCTD5 TMEM204 MIR6511B1 MIR662 WFIKKN1 AXIN1 C16orf59 LOC101929280 RPL23AP5 RHOT2 HBA1 PRSS29P RPUSD1 TBC1D24 SLC9A3R2 TMEM8A CLCN7 PGP NDUFB10 LOC105371046 LOC729652 NTHL1 FAM234A PKD1 NARFL CEMP1 SSTR5-AS1 LOC105371047 LOC107987233 DNASE1L2 LOC105371049 PIGQ TSC2 SNORA10 ARHGDIG ABCA3 CAPN15 PTX4 LOC100287175 LINC00235 LOC107984876 LMF1-AS1 CCDC154 NME4 MLST8 CHTF18 RAB26
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss MCRIP2 MSLN GNG13 FBXL16 MIR662 LOC100287175 LOC105371184 LOC105371038 METRN NARFL RHOT2 WDR24 FAM173A JMJD8 RPUSD1 STUB1 CCDC78 CHTF18 WDR90 HAGHL RHBDL1
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss MCRIP2 RAB40C MIR3176 FBXL16 MIR5587 LOC105371184 METTL26 NARFL WDR24 FAM173A LOC107987233 WDR90 NHLRC4 PIGQ MSLN GNG13 PRR25 CAPN15 MIR662 WFIKKN1 LOC100287175 LINC00235 LOC105371038 LOC101929280 METRN RHOT2 PRR35 JMJD8 RPUSD1 STUB1 CCDC78 CHTF18 HAGHL RAB11FIP3 RHBDL1
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss MCRIP2 RAB40C MIR3176 FBXL16 MIR5587 LOC105371184 METTL26 NARFL WDR24 FAM173A LOC107987233 WDR90 NHLRC4 PIGQ MSLN GNG13 PRR25 CAPN15 MIR662 WFIKKN1 LOC100287175 LINC00235 LOC105371038 LOC101929280 METRN RHOT2 PRR35 JMJD8 RPUSD1 STUB1 CCDC78 CHTF18 HAGHL RAB11FIP3 RHBDL1
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion MCRIP2 RAB40C MIR3176 FBXL16 MIR5587 LOC105371184 METTL26 NARFL WDR24 FAM173A SSTR5-AS1 LOC107987233 WDR90 C1QTNF8 LMF1 NHLRC4 PIGQ MSLN GNG13 PRR25 SSTR5 CAPN15 MIR662 WFIKKN1 LOC100287175 LINC00235 LOC105371038 LOC101929280 METRN LOC107984876 RHOT2 LMF1-AS1 PRR35 SOX8 JMJD8 RPUSD1 STUB1 CCDC78 CHTF18 HAGHL RAB11FIP3 RHBDL1
nsv571042 Chr.16:785298 - 847566 on Build GRCh38 Loss GNG13 PRR25 RPUSD1 CHTF18
dgv4827n54 Chr.16:760039 - 810673 on Build GRCh38 Loss MSLN GNG13 PRR25 RPUSD1 MIR662 CHTF18
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication MCRIP2 RAB40C FBXL16 LOC105371184 METTL26 NARFL WDR24 FAM173A WDR90 PIGQ MSLN GNG13 MIR662 WFIKKN1 LOC100287175 LOC105371038 LOC101929280 METRN RHOT2 JMJD8 RPUSD1 STUB1 CCDC78 CHTF18 HAGHL RHBDL1
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication MCRIP2 RAB40C MIR3176 FBXL16 MIR5587 LOC105371184 METTL26 NARFL WDR24 FAM173A LOC107987233 WDR90 NHLRC4 PIGQ MSLN GNG13 PRR25 CAPN15 MIR662 WFIKKN1 LOC100287175 LINC00235 LOC105371038 LOC101929280 METRN RHOT2 PRR35 JMJD8 RPUSD1 STUB1 CCDC78 CHTF18 HAGHL RAB11FIP3 RHBDL1

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More Information


Additional Information:

For this assay, SNP(s) [rs73491297,rs78620657] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


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