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See other LRRC56 CNV Assays ›
Gene Symbol
LRRC56
Assay Reference Genome
Location

Chr.11:538788 on build GRCh38
Cytoband
11p15.5
Assay ID Hs01594209_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 115399

Gene Name:

 leucine rich repeat containing 56

Gene Aliases:

 -

Location:

 Chr.11:518967-554916 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 5 - Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LRRC56 NM_198075.3 NP_932341.1
XM_005252775.2 XP_005252832.1
XM_005252776.2 XP_005252833.1
XM_006718132.2 XP_006718195.1
XM_011519875.2 XP_011518177.1
XM_011519876.1 XP_011518178.1
XM_011519877.2 XP_011518179.1
XM_017017167.1 XP_016872656.1
XM_017017168.1 XP_016872657.1
AK024495.1 BAB15785.1
BC035937.1 AAH35937.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv467634 Chr.11:511805 - 619789 on Build GRCh38 Loss MIR210HG LRRC56 LOC101059906 PHRF1 LMNTD2 CDHR5 IRF7 LOC143666 RASSF7 HRAS MIR210
nsv527327 Chr.11:295343 - 620599 on Build GRCh38 Loss IFITM2 IFITM3 SIGIRR IFITM1 MIR210HG PKP3 LOC101059906 PHRF1 LMNTD2 RNH1 PTDSS2 ANO9 IRF7 LOC143666 RASSF7 IFITM5 LRRC56 B4GALNT4 CDHR5 HRAS PGGHG MIR210
nsv951270 Chr.11:528401 - 628100 on Build GRCh38 Deletion MIR210HG LRRC56 LOC101059906 PHRF1 LMNTD2 CDHR5 SCT IRF7 LOC143666 RASSF7 HRAS MIR210
nsv469923 Chr.11:378188 - 1302334 on Build GRCh38 Loss AP2A2 SIGIRR TMEM80 EPS8L2 CD151 MIR210HG SNORA52 PKP3 LOC171391 LOC101059906 PHRF1 RNH1 PTDSS2 SLC25A22 CHID1 CRACR2B ANO9 PIDD1 MUC6 IRF7 MUC5B RASSF7 PANO1 POLR2L LRRC56 DEAF1 TSPAN4 B4GALNT4 TOLLIP MUC2 CDHR5 LOC101927503 PDDC1 RPLP2 TALDO1 PNPLA2 MUC5AC LMNTD2 LOC143666 DRD4 CEND1 SCT MIR6744 HRAS MIR210
esv2759794 Chr.11:409846 - 1336162 on Build GRCh38 Loss AP2A2 SIGIRR TMEM80 EPS8L2 CD151 MIR210HG SNORA52 LOC171391 LOC101059906 PHRF1 RNH1 PTDSS2 SLC25A22 CHID1 CRACR2B ANO9 PIDD1 MUC6 IRF7 MUC5B RASSF7 PANO1 POLR2L LRRC56 DEAF1 TSPAN4 TOLLIP MUC2 CDHR5 LOC101927503 PDDC1 RPLP2 TALDO1 PNPLA2 TOLLIP-AS1 MUC5AC LMNTD2 LOC143666 DRD4 CEND1 SCT MIR6744 HRAS MIR210
nsv1039558 Chr.11:534242 - 672091 on Build GRCh38 Gain MIR210HG PHRF1 LMNTD2 IRF7 LOC143666 RASSF7 DRD4 LRRC56 DEAF1 CDHR5 SCT HRAS MIR210
nsv1053964 Chr.11:491334 - 692433 on Build GRCh38 Gain MIR210HG LOC101059906 PHRF1 LMNTD2 RNH1 PTDSS2 IRF7 LOC143666 RASSF7 DRD4 LRRC56 DEAF1 CDHR5 SCT HRAS MIR210
dgv182e199 Chr.11:349830 - 943372 on Build GRCh38 Deletion AP2A2 SIGIRR TMEM80 EPS8L2 CD151 MIR210HG SNORA52 PKP3 LOC171391 LOC101059906 PHRF1 RNH1 PTDSS2 SLC25A22 CHID1 CRACR2B ANO9 PIDD1 IRF7 RASSF7 PANO1 POLR2L LRRC56 DEAF1 TSPAN4 B4GALNT4 CDHR5 PDDC1 RPLP2 TALDO1 PNPLA2 LMNTD2 LOC143666 DRD4 CEND1 SCT HRAS MIR210
nsv1159791 Chr.11:461793 - 909492 on Build GRCh38 Deletion TMEM80 EPS8L2 CD151 MIR210HG SNORA52 LOC171391 LOC101059906 PHRF1 RNH1 PTDSS2 SLC25A22 CHID1 CRACR2B PIDD1 IRF7 RASSF7 PANO1 POLR2L LRRC56 DEAF1 TSPAN4 CDHR5 PDDC1 RPLP2 TALDO1 PNPLA2 LMNTD2 LOC143666 DRD4 CEND1 SCT HRAS MIR210
nsv552855 Chr.11:532923 - 545087 on Build GRCh38 Loss LRRC56 HRAS

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More Information


Additional Information:

For this assay, SNP(s) [rs142954066] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

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