Hs01594209_cn

• Gene Symbol: LRRC56
• Assay Reference Genome Location: Chr.11:538788 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 115399
• Gene Name: leucine rich repeat containing 56
• Gene Aliases: -
• Location: Chr.11:518967-554916 on Build GRCh38
• Assay Gene Location: Overlaps Exon 5 - Intron 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LRRC56	NM_198075.3			NP_932341.1
	XM_005252775.2			XP_005252832.1
	XM_005252776.2			XP_005252833.1
	XM_006718132.2			XP_006718195.1
	XM_011519875.2			XP_011518177.1
	XM_011519876.1			XP_011518178.1
	XM_011519877.2			XP_011518179.1
	XM_017017167.1			XP_016872656.1
	XM_017017168.1			XP_016872657.1
	AK024495.1			BAB15785.1
	BC035937.1			AAH35937.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552854	Chr.11:511805 - 619789 on Build GRCh38	Loss	LOC143666 PHRF1 MIR210HG LOC101059906 HRAS CDHR5 MIR210 RASSF7 LMNTD2 LRRC56 IRF7
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	LOC143666 PHRF1 PGGHG LOC101059906 CDHR5 SIGIRR MIR210 IFITM1 ANO9 IFITM5 RNH1 RASSF7 LRRC56 B4GALNT4 PKP3 IFITM3 MIR210HG HRAS IFITM2 LMNTD2 IRF7 PTDSS2
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	LOC143666 PHRF1 MIR210HG LOC101059906 HRAS CDHR5 MIR210 RASSF7 LMNTD2 LRRC56 IRF7 SCT
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	CHID1 LOC101059906 CDHR5 MIR210 TSPAN4 RNH1 RASSF7 CRACR2B SLC25A22 LRRC56 B4GALNT4 PANO1 MIR6744 EPS8L2 MUC5B LMNTD2 IRF7 LOC171391 RPLP2 LOC143666 PHRF1 SIGIRR MUC5AC ANO9 SNORA52 MUC6 PIDD1 PDDC1 SCT PKP3 CD151 DEAF1 MUC2 MIR210HG AP2A2 HRAS POLR2L TMEM80 LOC101927503 TALDO1 CEND1 TOLLIP DRD4 PTDSS2 PNPLA2
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	CHID1 LOC101059906 CDHR5 MIR210 TSPAN4 RNH1 RASSF7 CRACR2B SLC25A22 LRRC56 TOLLIP-AS1 PANO1 MIR6744 EPS8L2 MUC5B LMNTD2 IRF7 LOC171391 RPLP2 LOC143666 PHRF1 SIGIRR MUC5AC ANO9 SNORA52 MUC6 PIDD1 PDDC1 SCT CD151 DEAF1 MUC2 MIR210HG AP2A2 HRAS POLR2L TMEM80 LOC101927503 TALDO1 CEND1 TOLLIP DRD4 PTDSS2 PNPLA2
nsv1039558	Chr.11:534242 - 672091 on Build GRCh38	Gain	LOC143666 PHRF1 CDHR5 MIR210 RASSF7 LRRC56 SCT DEAF1 MIR210HG HRAS LMNTD2 DRD4 IRF7
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	CHID1 LOC101059906 CDHR5 MIR210 TSPAN4 RNH1 RASSF7 CRACR2B SLC25A22 LRRC56 B4GALNT4 PANO1 EPS8L2 LMNTD2 IRF7 LOC171391 RPLP2 LOC143666 PHRF1 SIGIRR ANO9 SNORA52 PIDD1 PDDC1 SCT PKP3 CD151 DEAF1 MIR210HG AP2A2 HRAS POLR2L TMEM80 TALDO1 CEND1 DRD4 PTDSS2 PNPLA2
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	LOC143666 PHRF1 LOC101059906 CDHR5 MIR210 RNH1 RASSF7 LRRC56 SCT DEAF1 MIR210HG HRAS LMNTD2 DRD4 IRF7 PTDSS2
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	CHID1 LOC101059906 CDHR5 MIR210 TSPAN4 RNH1 RASSF7 CRACR2B SLC25A22 LRRC56 PANO1 EPS8L2 LMNTD2 IRF7 LOC171391 RPLP2 LOC143666 PHRF1 SNORA52 PIDD1 PDDC1 SCT CD151 DEAF1 MIR210HG HRAS POLR2L TMEM80 TALDO1 CEND1 DRD4 PTDSS2 PNPLA2
nsv552855	Chr.11:532923 - 545087 on Build GRCh38	Loss	HRAS LRRC56

More Information

Additional Information:

For this assay, SNP(s) [rs142954066] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Non-exonic, DGV Variation