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See other CPSF3L CNV Assays ›
Gene Symbol
CPSF3L
Assay Reference Genome
Location

Chr.1:1312855 on build GRCh38
Cytoband
1p36.33
Assay ID Hs01604883_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 54973

Gene Name:

 cleavage and polyadenylation specific factor 3-like

Gene Aliases:

 CPSF73L, INT11, INTS11, RC-68, RC68

Location:

 Chr.1:1311585-1324687 on Build GRCh38

Assay Gene Location:

 Within Exon 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CPSF3L NM_001256456.1 14 1778 NP_001243385.1
NM_001256460.1 13 1412 NP_001243389.1
NM_001256462.1 10 1011 NP_001243391.1
NM_001256463.1 10 1002 NP_001243392.1
NM_017871.5 12 1305 NP_060341.2
XM_011541647.1 14 1456 XP_011539949.1
XM_011541648.1 14 1460 XP_011539950.1
XM_011541650.1 12 1185 XP_011539952.1
XM_017001557.1 13 1261 XP_016857046.1
XM_017001558.1 14 1315 XP_016857047.1
AK000549.1 4 449 BAA91246.1
AK021939.1 10 968 BAB13943.1
AK023356.1 12 1223 BAB14541.1
AK056652.1 14 1700
AK058018.1 10 977
AK092190.1 9 1038
AK123641.1 3 2092
AK291387.1 14 1741
AK297350.1 13 1362
AL136813.1 12 1284 CAB66747.1
BC000675.2 9 845 AAH00675.2
BC007978.2 12 1267 AAH07978.1
BC008041.2 AAH08041.1
BC013904.2 8 714 AAH13904.2
BC020199.1 AAH20199.1
CR533557.1 12 1226 CAG38588.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MRPL20 CPSF3L LOC100288175 C1orf159 SLC35E2 B3GALT6 ATAD3A LOC107985728 SCNN1D HES4 TAS1R3 ACAP3 MIR6859-1 MIR429 SDF4 TMEM240 PERM1 TNFRSF4 MORN1 MTND2P28 NOC2L CFAP74 LOC102725121 OR4F5 MIR1302-2 NADK CDK11B MMP23B MIR200B TTLL10 GNB1 MXRA8 MIB2 CDK11A FAM138A MIR6808 FAM87B LOC102724312 FAM41C LOC105378947 TNFRSF18 DDX11L1 OR4F29 ANKRD65 UBE2J2 LOC284600 AGRN LINC01128 CPTP MIR6727 MIR6859-2 KLHL17 LINC01342 LOC148413 LOC105378948 LOC107984841 FAAP20 WASH7P SSU72 ATAD3B MIR6726 LOC100288069 LOC100133331 PRKCZ LOC729737 LOC105378592 TTLL10-AS1 LOC100132287 ISG15 MTND1P23 MIR6723 SKI LINC00115 MIR200A PLEKHN1 SLC35E2B OR4F16 AURKAIP1 MMP23A RNF223 GABRD FAM132A VWA1 SAMD11 LOC105378591 DVL1 LOC107985729 LOC100287934 LOC100134822 LOC105378949 ATAD3C LOC100130417 LOC101928626 CCNL2 LOC100129534 LOC100506504 PUSL1 TMEM52 FNDC10 TMEM88B LOC105378589 CALML6
nsv544971 Chr.1:1294063 - 1351426 on Build GRCh38 Loss MIR6726 DVL1 CPSF3L TAS1R3 ACAP3 MIR6808 CPTP MIR6727 PUSL1
nsv544969 Chr.1:1290683 - 1374597 on Build GRCh38 Loss SCNN1D MIR6726 DVL1 CPSF3L TAS1R3 MXRA8 ACAP3 MIR6808 AURKAIP1 CPTP MIR6727 PUSL1
dgv7n100 Chr.1:1306835 - 1379057 on Build GRCh38 Loss DVL1 CPSF3L TAS1R3 MXRA8 ACAP3 MIR6808 AURKAIP1 CPTP MIR6727 PUSL1
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss DVL1 TTLL10-AS1 CPSF3L MIR6808 C1orf159 B3GALT6 TNFRSF18 SCNN1D TAS1R3 ACAP3 MIR429 SDF4 TNFRSF4 UBE2J2 MIR200A CPTP MIR6727 PUSL1 AURKAIP1 LINC01342 RNF223 MIR200B TTLL10 FAM132A MIR6726 MXRA8
dgv6n100 Chr.1:1301750 - 1362354 on Build GRCh38 Gain+Loss DVL1 CPSF3L TAS1R3 MXRA8 ACAP3 MIR6808 CPTP MIR6727 PUSL1
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication TTLL10-AS1 CPSF3L LOC100288175 C1orf159 B3GALT6 TNFRSF18 SCNN1D TAS1R3 ACAP3 MIR429 SDF4 TNFRSF4 UBE2J2 AGRN MIR200A CPTP MIR6727 PUSL1 LINC01342 RNF223 MIR200B TTLL10 LOC105378948 FAM132A MIR6726
nsv1160788 Chr.1:1282706 - 1376336 on Build GRCh38 Deletion SCNN1D MIR6726 DVL1 CPSF3L TAS1R3 MXRA8 ACAP3 MIR6808 AURKAIP1 CPTP MIR6727 PUSL1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MRPL20 TTLL10-AS1 CPSF3L LOC100288175 ISG15 C1orf159 SLC35E2 B3GALT6 ATAD3A LOC107985728 SCNN1D HES4 LINC00115 TAS1R3 ACAP3 MIR429 SDF4 TMEM240 PERM1 TNFRSF4 NOC2L MIR200A PLEKHN1 NADK SLC35E2B AURKAIP1 CDK11B MMP23B MMP23A RNF223 MIR200B TTLL10 FAM132A MXRA8 VWA1 MIB2 SAMD11 CDK11A DVL1 MIR6808 LOC107985729 FAM87B LOC100287934 LOC102724312 FAM41C TNFRSF18 ATAD3C LOC100130417 CCNL2 ANKRD65 UBE2J2 LOC284600 AGRN LINC01128 CPTP MIR6727 PUSL1 KLHL17 LINC01342 LOC148413 LOC105378948 SSU72 ATAD3B MIR6726 LOC100288069 FNDC10 TMEM88B
esv3890636 Chr.1:1304555 - 1353203 on Build GRCh38 Loss DVL1 CPSF3L TAS1R3 MXRA8 ACAP3 MIR6808 CPTP MIR6727 PUSL1
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MRPL20 DVL1 TTLL10-AS1 CPSF3L MIR6808 LOC107985729 C1orf159 LOC102724312 B3GALT6 ATAD3A TNFRSF18 SCNN1D ATAD3C TAS1R3 ACAP3 CCNL2 ANKRD65 MIR429 SDF4 TMEM240 TNFRSF4 UBE2J2 MIR200A CPTP MIR6727 PUSL1 AURKAIP1 CDK11B MMP23B LINC01342 LOC148413 MIR200B TTLL10 FAM132A SSU72 ATAD3B MIR6726 MXRA8 VWA1 FNDC10 MIB2 TMEM88B
nsv1000169 Chr.1:1281678 - 1362354 on Build GRCh38 Gain SCNN1D MIR6726 DVL1 CPSF3L TAS1R3 MXRA8 ACAP3 MIR6808 CPTP MIR6727 PUSL1
esv2758912 Chr.1:1263940 - 1384492 on Build GRCh38 Loss DVL1 CPSF3L MIR6808 AURKAIP1 SCNN1D MIR6726 TAS1R3 MXRA8 ACAP3 UBE2J2 CPTP MIR6727 PUSL1
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain MRPL20 DVL1 TTLL10-AS1 CPSF3L LOC100288175 MIR6808 ISG15 C1orf159 B3GALT6 LOC107985728 TNFRSF18 SCNN1D HES4 LOC100130417 TAS1R3 ACAP3 CCNL2 ANKRD65 MIR429 SDF4 PERM1 TNFRSF4 UBE2J2 LOC284600 AGRN NOC2L MIR200A CPTP MIR6727 PUSL1 PLEKHN1 KLHL17 AURKAIP1 LINC01342 RNF223 LOC148413 MIR200B TTLL10 LOC105378948 FAM132A MIR6726 MXRA8 SAMD11 TMEM88B
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain TTLL10-AS1 CPSF3L B3GALT6 MIR200B TTLL10 TNFRSF18 SCNN1D FAM132A MIR6726 ACAP3 MIR429 SDF4 TNFRSF4 UBE2J2 MIR200A MIR6727 PUSL1

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


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