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See other CPSF3L CNV Assays ›
Gene Symbol
CPSF3L
Assay Reference Genome
Location

Chr.1:1312669 on build GRCh38
Cytoband
1p36.33
Assay ID Hs01625224_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 54973

Gene Name:

 cleavage and polyadenylation specific factor 3-like

Gene Aliases:

 CPSF73L, INT11, INTS11, RC-68, RC68

Location:

 Chr.1:1311585-1324687 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 15 - Exon 15
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CPSF3L NM_001256456.1 NP_001243385.1
NM_001256460.1 NP_001243389.1
NM_001256462.1 NP_001243391.1
NM_001256463.1 NP_001243392.1
NM_017871.5 NP_060341.2
XM_011541647.1 XP_011539949.1
XM_011541648.1 XP_011539950.1
XM_011541650.1 XP_011539952.1
XM_017001557.1 XP_016857046.1
XM_017001558.1 XP_016857047.1
AK000549.1 BAA91246.1
AK021939.1 BAB13943.1
AK023356.1 BAB14541.1
AK056652.1
AK058018.1
AK092190.1
AK123641.1
AK291387.1
AK297350.1
AL136813.1 CAB66747.1
BC000675.2 AAH00675.2
BC007978.2 AAH07978.1
BC008041.2 AAH08041.1
BC013904.2 AAH13904.2
BC020199.1 AAH20199.1
CR533557.1 CAG38588.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MMP23B TAS1R3 MIB2 LOC105378947 LOC102725121 MMP23A MTND2P28 MORN1 FAM41C OR4F16 LOC105378591 LOC105378949 MXRA8 MIR6859-1 LOC105378589 KLHL17 LOC148413 FNDC10 ISG15 ACAP3 TMEM88B SCNN1D LOC100134822 LOC100288175 MIR6808 LOC107985728 ATAD3A LOC100130417 MRPL20 CDK11B TMEM240 LOC100132287 LINC01128 TNFRSF4 LINC01342 CDK11A DVL1 MIR6723 WASH7P OR4F29 AURKAIP1 NOC2L PERM1 TTLL10 CCNL2 VWA1 LOC100133331 SLC35E2 B3GALT6 SAMD11 MIR429 TNFRSF18 CPSF3L LOC107984841 TTLL10-AS1 LOC105378948 GNB1 LOC100129534 FAM87B UBE2J2 OR4F5 FAM138A FAAP20 SKI MIR200B RNF223 PRKCZ PLEKHN1 MTND1P23 C1orf159 HES4 LOC107985729 LINC00115 LOC100288069 TMEM52 MIR6727 LOC729737 MIR1302-2 ANKRD65 SLC35E2B GABRD NADK CPTP LOC100506504 LOC102724312 MIR200A PUSL1 DDX11L1 LOC105378592 ATAD3B LOC100287934 MIR6859-2 MIR6726 FAM132A LOC284600 ATAD3C AGRN CFAP74 LOC101928626 SDF4 CALML6 SSU72
nsv544971 Chr.1:1294063 - 1351426 on Build GRCh38 Loss MIR6726 TAS1R3 DVL1 CPTP MIR6808 CPSF3L PUSL1 MIR6727 ACAP3
nsv544969 Chr.1:1290683 - 1374597 on Build GRCh38 Loss MIR6726 AURKAIP1 TAS1R3 SCNN1D DVL1 MXRA8 CPTP MIR6808 CPSF3L PUSL1 MIR6727 ACAP3
dgv7n100 Chr.1:1306835 - 1379057 on Build GRCh38 Loss AURKAIP1 TAS1R3 DVL1 MXRA8 CPTP MIR6808 CPSF3L PUSL1 MIR6727 ACAP3
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss TAS1R3 CPTP TNFRSF18 CPSF3L MIR200A PUSL1 TNFRSF4 LINC01342 TTLL10-AS1 DVL1 UBE2J2 MIR6726 FAM132A AURKAIP1 MXRA8 MIR200B RNF223 ACAP3 TTLL10 C1orf159 SDF4 SCNN1D MIR6808 MIR6727 B3GALT6 MIR429
dgv6n100 Chr.1:1301750 - 1362354 on Build GRCh38 Gain+Loss TAS1R3 DVL1 MXRA8 CPTP MIR6808 CPSF3L PUSL1 MIR6727 ACAP3
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication TAS1R3 CPTP TNFRSF18 CPSF3L MIR200A PUSL1 TNFRSF4 LINC01342 TTLL10-AS1 LOC105378948 UBE2J2 MIR6726 FAM132A AGRN MIR200B RNF223 ACAP3 TTLL10 C1orf159 SDF4 SCNN1D LOC100288175 MIR6727 B3GALT6 MIR429
nsv1160788 Chr.1:1282706 - 1376336 on Build GRCh38 Deletion MIR6726 AURKAIP1 TAS1R3 SCNN1D DVL1 MXRA8 CPTP MIR6808 CPSF3L PUSL1 MIR6727 ACAP3
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MMP23B TAS1R3 TNFRSF18 MIB2 CPSF3L MMP23A TTLL10-AS1 LOC105378948 FAM87B UBE2J2 FAM41C MXRA8 KLHL17 MIR200B LOC148413 FNDC10 RNF223 ISG15 ACAP3 PLEKHN1 TMEM88B C1orf159 HES4 SCNN1D LOC107985729 LINC00115 LOC100288175 MIR6808 LOC100288069 LOC107985728 ATAD3A MIR6727 LOC100130417 ANKRD65 SLC35E2B MRPL20 CDK11B TMEM240 NADK CPTP LOC102724312 MIR200A PUSL1 LINC01128 TNFRSF4 LINC01342 ATAD3B LOC100287934 CDK11A DVL1 MIR6726 FAM132A AURKAIP1 LOC284600 ATAD3C NOC2L AGRN PERM1 TTLL10 CCNL2 SDF4 VWA1 SLC35E2 B3GALT6 SAMD11 MIR429 SSU72
esv3890636 Chr.1:1304555 - 1353203 on Build GRCh38 Loss TAS1R3 DVL1 MXRA8 CPTP MIR6808 CPSF3L PUSL1 MIR6727 ACAP3
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MMP23B CDK11B TMEM240 TAS1R3 CPTP LOC102724312 TNFRSF18 MIB2 CPSF3L MIR200A PUSL1 TNFRSF4 LINC01342 TTLL10-AS1 ATAD3B DVL1 UBE2J2 MIR6726 FAM132A AURKAIP1 MXRA8 ATAD3C MIR200B LOC148413 FNDC10 ACAP3 TTLL10 TMEM88B C1orf159 CCNL2 SDF4 SCNN1D LOC107985729 VWA1 MIR6808 ATAD3A MIR6727 B3GALT6 MIR429 ANKRD65 SSU72 MRPL20
nsv1000169 Chr.1:1281678 - 1362354 on Build GRCh38 Gain MIR6726 TAS1R3 SCNN1D DVL1 MXRA8 CPTP MIR6808 CPSF3L PUSL1 MIR6727 ACAP3
esv2758912 Chr.1:1263940 - 1384492 on Build GRCh38 Loss MIR6726 AURKAIP1 TAS1R3 MXRA8 CPTP CPSF3L PUSL1 ACAP3 SCNN1D DVL1 MIR6808 UBE2J2 MIR6727
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain TAS1R3 CPTP TNFRSF18 CPSF3L MIR200A PUSL1 TNFRSF4 LINC01342 TTLL10-AS1 LOC105378948 DVL1 UBE2J2 MIR6726 FAM132A AURKAIP1 MXRA8 LOC284600 NOC2L KLHL17 AGRN MIR200B PERM1 LOC148413 RNF223 ISG15 ACAP3 PLEKHN1 TTLL10 TMEM88B C1orf159 CCNL2 SDF4 HES4 SCNN1D LOC100288175 MIR6808 LOC107985728 MIR6727 B3GALT6 SAMD11 LOC100130417 MIR429 ANKRD65 MRPL20
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain MIR6726 FAM132A TNFRSF18 CPSF3L MIR200A PUSL1 MIR200B TNFRSF4 ACAP3 TTLL10-AS1 TTLL10 SDF4 SCNN1D UBE2J2 MIR6727 B3GALT6 MIR429

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


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