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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1217214 on build GRCh38
Cytoband
1p36.33
Assay ID Hs01638124_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Exon 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 7 1716 NP_057260.2
NM_016547.2 7 1832 NP_057631.1
AF153686.1 7 1812 AAD51612.1
AF178986.1 7 1796 AAF44350.1
AK000717.1 5 2579
AK027277.1 8 1308 BAB55012.1
AK055331.1 2 2311
AK075352.1 7 1650 BAC11563.1
AK126927.1 3 3234
AK222521.1 7 1634 BAD96241.1
BC006211.2 7 1597 AAH06211.1
BC007625.1 6 1465 AAH07625.1
BC008917.2 7 1616 AAH08917.1
BC011244.1 7 1570 AAH11244.1
BC022375.1 7 1650 AAH22375.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss ANKRD65 MXRA8 LOC105378948 PRKCZ ISG15 ACAP3 SCNN1D C1orf159 LINC01128 MIR6859-2 LOC100133331 DDX11L1 LOC107985729 OR4F16 DVL1 MMP23B MRPL20 MMP23A MIR200B GNB1 SAMD11 CALML6 LOC100129534 LOC102725121 NADK WASH7P TMEM240 LOC100130417 MTND1P23 TMEM52 TAS1R3 TTLL10-AS1 LOC102724312 LOC729737 B3GALT6 MIR6723 NOC2L MIR6727 LOC100288175 UBE2J2 PERM1 VWA1 FAM41C SLC35E2B TMEM88B PUSL1 LOC105378591 CCNL2 FAM87B FNDC10 LOC105378592 TNFRSF18 SLC35E2 OR4F29 GABRD AURKAIP1 LOC107985728 TNFRSF4 FAM138A LOC105378589 LOC105378947 ATAD3B ATAD3C LOC148413 LOC101928626 SSU72 AGRN LOC100506504 LOC100287934 LOC284600 MIR1302-2 LOC100132287 CDK11B MIR6859-1 PLEKHN1 HES4 LINC01342 CPTP CPSF3L LINC00115 KLHL17 MIR6726 LOC107984841 FAM132A SDF4 MIR200A MIR6808 LOC105378949 CFAP74 MIB2 CDK11A LOC100134822 OR4F5 MTND2P28 RNF223 MORN1 LOC100288069 FAAP20 MIR429 SKI TTLL10 ATAD3A
nsv544965 Chr.1:1217251 - 1306704 on Build GRCh38 Loss SDF4 UBE2J2 ACAP3 MIR6726 SCNN1D FAM132A B3GALT6
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain TNFRSF18 UBE2J2 LOC105378948 SCNN1D FAM132A TNFRSF4 C1orf159 RNF223 SDF4 MIR200B TTLL10-AS1 MIR200A MIR429 TTLL10 LINC01342 B3GALT6
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss TNFRSF18 UBE2J2 ACAP3 MIR6726 SCNN1D FAM132A TNFRSF4 C1orf159 RNF223 SDF4 MIR200B TTLL10-AS1 MIR200A MIR429 TTLL10 LINC01342 B3GALT6
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TNFRSF18 SDF4 TTLL10-AS1 TNFRSF4 TTLL10 B3GALT6
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain TNFRSF18 LOC105378948 ISG15 KLHL17 LOC107985728 TNFRSF4 C1orf159 LOC100130417 SDF4 TTLL10-AS1 MIR200A NOC2L LOC100288175 AGRN PERM1 FAM41C LOC284600 RNF223 MIR200B SAMD11 MIR429 PLEKHN1 TTLL10 HES4 LINC01342
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication TNFRSF18 CPSF3L LOC105378948 ACAP3 MIR6726 SCNN1D FAM132A TNFRSF4 C1orf159 TAS1R3 SDF4 TTLL10-AS1 MIR200A B3GALT6 MIR6727 LOC100288175 UBE2J2 AGRN PUSL1 RNF223 MIR200B MIR429 TTLL10 LINC01342 CPTP
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss FNDC10 TNFRSF18 SLC35E2 ANKRD65 MXRA8 LOC105378948 ISG15 ACAP3 SCNN1D AURKAIP1 LOC107985728 TNFRSF4 C1orf159 ATAD3B ATAD3C LINC01128 LOC148413 LOC107985729 SSU72 DVL1 AGRN MMP23B LOC100287934 MRPL20 LOC284600 MMP23A MIR200B SAMD11 CDK11B PLEKHN1 HES4 LINC01342 CPTP CPSF3L LINC00115 KLHL17 NADK MIR6726 TMEM240 FAM132A LOC100130417 TAS1R3 SDF4 TTLL10-AS1 LOC102724312 MIR200A MIR6808 B3GALT6 NOC2L MIR6727 LOC100288175 MIB2 CDK11A UBE2J2 PERM1 VWA1 FAM41C SLC35E2B TMEM88B PUSL1 RNF223 CCNL2 LOC100288069 MIR429 TTLL10 FAM87B ATAD3A
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss TNFRSF18 LINC00115 LOC105378948 ISG15 KLHL17 LOC107985728 FAM132A TNFRSF4 C1orf159 LOC100130417 SDF4 TTLL10-AS1 MIR200A LINC01128 B3GALT6 NOC2L LOC100288175 UBE2J2 AGRN PERM1 FAM41C LOC284600 RNF223 MIR200B SAMD11 MIR429 PLEKHN1 TTLL10 HES4 LINC01342 FAM87B
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion FNDC10 TNFRSF18 CPSF3L ANKRD65 MXRA8 ACAP3 MIR6726 SCNN1D AURKAIP1 TMEM240 FAM132A TNFRSF4 C1orf159 TAS1R3 SDF4 TTLL10-AS1 LOC102724312 MIR200A ATAD3B MIR6808 ATAD3C LOC148413 LOC107985729 B3GALT6 MIR6727 SSU72 MIB2 DVL1 UBE2J2 VWA1 MMP23B MRPL20 TMEM88B PUSL1 MIR200B CCNL2 CDK11B MIR429 TTLL10 LINC01342 CPTP ATAD3A
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain TNFRSF18 CPSF3L ANKRD65 MXRA8 LOC105378948 ISG15 KLHL17 ACAP3 MIR6726 SCNN1D AURKAIP1 LOC107985728 FAM132A TNFRSF4 C1orf159 LOC100130417 TAS1R3 SDF4 TTLL10-AS1 MIR200A MIR6808 LOC148413 B3GALT6 NOC2L MIR6727 LOC100288175 DVL1 UBE2J2 AGRN PERM1 MRPL20 LOC284600 TMEM88B PUSL1 RNF223 MIR200B CCNL2 SAMD11 MIR429 PLEKHN1 TTLL10 HES4 LINC01342 CPTP
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion NOC2L TNFRSF18 LOC100288175 AGRN PERM1 LOC105378948 ISG15 KLHL17 TNFRSF4 C1orf159 RNF223 SDF4 MIR200B TTLL10-AS1 SAMD11 MIR200A MIR429 PLEKHN1 TTLL10 HES4 LINC01342
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain MIR6727 TNFRSF18 CPSF3L UBE2J2 ACAP3 MIR6726 SCNN1D FAM132A TNFRSF4 PUSL1 SDF4 MIR200B TTLL10-AS1 MIR200A MIR429 TTLL10 B3GALT6

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More Information


Additional Information:

For this assay, SNP(s) [rs74355107] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

calmodulin-related

Gene Ontology Categories:

Function(s) Process(es)


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