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See other PDPK1 CNV Assays ›
Gene Symbol
PDPK1
Assay Reference Genome
Location

Chr.16:2598218 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01646216_cn
Size
Availability Made To Order
Catalog # 4400291
Price 4,505.00
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Assay Details

Target Gene Details

Entrez Gene ID:

 5170

Gene Name:

 3-phosphoinositide dependent protein kinase 1

Gene Aliases:

 PDK1, PDPK2, PDPK2P, PRO0461

Location:

 Chr.16:2537964-2603190 on Build GRCh38

Assay Gene Location:

 Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDPK1 NM_001261816.1 12 2060 NP_001248745.1
NM_002613.4 14 2271 NP_002604.1
NM_031268.5 11 1890 NP_112558.2
XM_011522521.2 14 5959 XP_011520823.1
XM_011522523.2 11 5583 XP_011520825.1
XM_017023271.1 13 6339 XP_016878760.1
XM_017023272.1 13 2895 XP_016878761.1
XM_017023273.1 13 2604 XP_016878762.1
XM_017023274.1 14 2742 XP_016878763.1
XM_017023275.1 10 5964 XP_016878764.1
XM_017023276.1 10 2208 XP_016878765.1
XM_017023277.1 11 2306 XP_016878766.1
BC033494.1 11 1803 AAH33494.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication METTL26 HBA1 TMEM204 LOC105371038 MIR3178 MIR940 RPS2 E4F1 LOC107987233 MIR3177 RNF151 NUBP2 CCDC154 ABCA17P CAPN15 FAHD1 TPSAB1 HBM FAM234A IGFALS CCNF TPSB2 UBE2I GFER MIR6768 SYNGR3 KCTD5 RPL23AP5 PIGQ LOC105371045 SNRNP25 MIR3176 SNORA10 SOX8 FAM173A DDX11L10 HN1L BAIAP3 CLCN7 LOC729652 CCDC78 LUC7L C1QTNF8 MIR3180-5 PTX4 TBL3 TELO2 C16orf91 NPW NME3 RAB11FIP3 WFIKKN1 PGP PDIA2 MIR5587 ERVK13-1 NPRL3 ATP6V0C ABCA3 LMF1-AS1 LOC107984876 MRPL28 CRAMP1 CHTF18 TSC2 STUB1 NARFL TRAF7 ECI1 SNORA78 DNASE1L2 BRICD5 MAPK8IP3 PRSS27 FBXL16 NME4 PKD1 PDPK1 NTHL1 C16orf59 TPSG1 SLC9A3R2 CASKIN1 HAGH AMDHD2 NOXO1 DECR2 NHLRC4 SSTR5-AS1 TBC1D24 HBZ MRPS34 MEIOB PRSS29P GNPTG MCRIP2 PRR25 LOC105371047 TMEM8A LOC105371184 RPUSD1 RPL3L MIR6767 LOC105371049 ZNF598 POLR3K LINC00254 SNHG19 HBA2 LOC101929280 RHOT2 RAB40C RAB26 MIR6511B1 SNHG9 LINC00235 MLST8 JMJD8 NTN3 SNORA64 WDR90 HAGHL RHBDL1 WDR24 RHBDF1 ARHGDIG RGS11 LMF1 LOC106660606 CEMP1 MIR4516 LOC652276 HS3ST6 MIR4717 LOC100287175 TSR3 SSTR5 MIR3677 PRR35 HBQ1 WASIR2 NDUFB10 LOC105371046 EME2 TPSD1 SPSB3 MIR1225 MSRB1 UNKL LOC100134368 FLJ42627 MPG SNORD60 MIR6859-4 MIR662 METRN IFT140 AXIN1 CACNA1H GNG13 RNPS1 MSLN
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss PRSS27 ERVK13-1 SRRM2-AS1 SRRM2 ATP6V0C PDPK1 CEMP1 PRSS41 MIR3178 PRSS21 TCEB2 FLJ42627 LOC652276 AMDHD2 KCTD5 PRSS33 TBC1D24
dgv2693n100 Chr.16:2593295 - 2676863 on Build GRCh38 Gain ERVK13-1 FLJ42627 LOC652276 PDPK1
esv3637634 Chr.16:2586284 - 2610862 on Build GRCh38 Gain LOC652276 PDPK1
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss ERVK13-1 FLJ42627 ATP6V0C LOC652276 AMDHD2 PDPK1 CEMP1 TBC1D24 MIR3178
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain PKD1 PDPK1 LOC106660606 CEMP1 LOC729652 MIR3178 MIR940 C16orf59 E4F1 MIR3180-5 ABCA17P CASKIN1 MIR4516 LOC652276 AMDHD2 MIR4717 PGP TBC1D24 MIR3677 ATP6V0C ABCA3 CCNF MIR6767 LOC105371049 MIR1225 TSC2 TRAF7 SNHG19 ECI1 SNORD60 RAB26 MIR6768 MIR6511B1 MLST8 DNASE1L2 BRICD5 RNPS1 NTN3
nsv833123 Chr.16:2561247 - 2764988 on Build GRCh38 Gain+Loss PRSS27 ERVK13-1 SRRM2-AS1 FLJ42627 SRRM2 LOC652276 KCTD5 PDPK1
dgv780e212 Chr.16:2595646 - 2700191 on Build GRCh38 Gain ERVK13-1 FLJ42627 LOC652276 KCTD5 PDPK1

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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