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See other PDPK1 CNV Assays ›
Gene Symbol
PDPK1
Assay Reference Genome
Location

Chr.16:2598218 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01646216_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5170

Gene Name:

 3-phosphoinositide dependent protein kinase 1

Gene Aliases:

 PDK1, PDPK2, PDPK2P, PRO0461

Location:

 Chr.16:2537964-2603190 on Build GRCh38

Assay Gene Location:

 Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDPK1 NM_001261816.1 12 2060 NP_001248745.1
NM_002613.4 14 2271 NP_002604.1
NM_031268.5 11 1890 NP_112558.2
XM_011522521.2 14 5959 XP_011520823.1
XM_011522523.2 11 5583 XP_011520825.1
XM_017023271.1 13 6339 XP_016878760.1
XM_017023272.1 13 2895 XP_016878761.1
XM_017023273.1 13 2604 XP_016878762.1
XM_017023274.1 14 2742 XP_016878763.1
XM_017023275.1 10 5964 XP_016878764.1
XM_017023276.1 10 2208 XP_016878765.1
XM_017023277.1 11 2306 XP_016878766.1
BC033494.1 11 1803 AAH33494.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MLST8 PRSS29P RHBDF1 NPRL3 MIR3677 NPW LOC105371045 NTHL1 TBL3 HS3ST6 PRR35 LOC105371047 ARHGDIG CACNA1H TSR3 MIR3176 HAGHL WASIR2 RNPS1 DECR2 CEMP1 PDPK1 METTL26 PDIA2 MCRIP2 DNASE1L2 TELO2 MSLN HBA2 MAPK8IP3 NDUFB10 STUB1 PTX4 EME2 PRSS27 METRN FLJ42627 CLCN7 TPSB2 MIR1225 TSC2 SPSB3 MIR6859-4 TPSAB1 CRAMP1 MIR6767 NTN3 ABCA17P SNHG9 MPG MRPL28 SOX8 GNG13 IGFALS WDR90 BAIAP3 SLC9A3R2 SNORD60 MRPS34 RHBDL1 HBQ1 FAM173A PGP LUC7L RPL3L MIR5587 HAGH HN1L C16orf59 LOC105371184 MEIOB CCDC78 ATP6V0C HBA1 HBZ UBE2I TMEM204 CAPN15 IFT140 LOC729652 MIR662 LOC106660606 ERVK13-1 LOC105371049 SNORA78 RAB26 RPUSD1 ABCA3 MIR6768 LOC107984876 WDR24 LOC100287175 LMF1 LOC100134368 SNHG19 CCDC154 PIGQ ECI1 MSRB1 KCTD5 NARFL DDX11L10 E4F1 RPL23AP5 WFIKKN1 LOC652276 NME3 LINC00235 FAM234A RGS11 FBXL16 BRICD5 FAHD1 SNORA64 NHLRC4 LOC105371046 RPS2 MIR3177 JMJD8 ZNF598 TRAF7 SNORA10 MIR3178 CCNF C16orf91 NUBP2 RAB40C SSTR5-AS1 MIR4717 MIR4516 RAB11FIP3 MIR3180-5 TPSD1 RNF151 CASKIN1 NOXO1 LOC105371038 SNRNP25 PRR25 AXIN1 SSTR5 SYNGR3 UNKL LOC101929280 GNPTG AMDHD2 CHTF18 LINC00254 RHOT2 NME4 TPSG1 TBC1D24 TMEM8A C1QTNF8 MIR6511B1 LOC107987233 MIR940 LMF1-AS1 HBM PKD1 POLR3K GFER
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss PRSS33 CEMP1 SRRM2 PDPK1 TCEB2 TBC1D24 PRSS41 SRRM2-AS1 MIR3178 KCTD5 ATP6V0C PRSS21 AMDHD2 LOC652276 PRSS27 FLJ42627 ERVK13-1
dgv2693n100 Chr.16:2593295 - 2676863 on Build GRCh38 Gain PDPK1 LOC652276 FLJ42627 ERVK13-1
esv3637634 Chr.16:2586284 - 2610862 on Build GRCh38 Gain PDPK1 LOC652276
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss MIR3178 ATP6V0C CEMP1 PDPK1 AMDHD2 LOC652276 TBC1D24 FLJ42627 ERVK13-1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MLST8 MIR1225 LOC105371049 TSC2 MIR3180-5 RAB26 ABCA3 MIR6768 MIR6767 NTN3 ABCA17P CASKIN1 SNHG19 MIR3677 ECI1 E4F1 AMDHD2 LOC652276 SNORD60 RNPS1 BRICD5 CEMP1 PDPK1 PGP TBC1D24 DNASE1L2 C16orf59 TRAF7 MIR3178 MIR6511B1 ATP6V0C MIR940 CCNF PKD1 LOC729652 MIR4717 MIR4516 LOC106660606
nsv833123 Chr.16:2561247 - 2764988 on Build GRCh38 Gain+Loss SRRM2-AS1 KCTD5 SRRM2 PDPK1 LOC652276 PRSS27 FLJ42627 ERVK13-1
dgv780e212 Chr.16:2595646 - 2700191 on Build GRCh38 Gain KCTD5 PDPK1 LOC652276 FLJ42627 ERVK13-1

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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