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See other SPSB3 CNV Assays ›
Gene Symbol
SPSB3
Assay Reference Genome
Location

Chr.16:1777355 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01652773_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 90864

Gene Name:

 splA/ryanodine receptor domain and SOCS box containing 3

Gene Aliases:

 C16orf31, SSB3

Location:

 Chr.16:1776712-1782605 on Build GRCh38

Assay Gene Location:

 Within Exon 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SPSB3 NM_001324081.1 7 879 NP_001311010.1
NM_080861.3 7 901 NP_543137.2
XM_005255673.4 7 1091 XP_005255730.1
AF403028.1 6 810 AAL57347.1
AK074190.1 7 865
BC007588.1 7 847
BC024244.1 7 865 AAH24244.1
BC041897.1 6 1675 AAH41897.1
BC047441.1 7 843
BI768095.1
BQ930544.1 2 183

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv457335 Chr.16:1729694 - 1789022 on Build GRCh38 Loss MIR3177 MAPK8IP3 NME3 NUBP2 SPSB3 EME2 MRPS34
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication TPSG1 ECI1 ATP6V0C LOC105371045 GNPTG LOC106660606 NTN3 MRPL28 HBZ NHLRC4 CLCN7 RNPS1 HAGH LMF1-AS1 TSC2 MIR662 RHBDL1 MIR6768 RHOT2 HBM RHBDF1 MIR4717 RNF151 DDX11L10 MSRB1 PDPK1 MIR3176 RAB11FIP3 LUC7L SNHG9 DECR2 PDIA2 LOC100134368 E4F1 MIR4516 LOC107984876 LINC00235 NPW RAB26 NME4 GNG13 CASKIN1 SNORD60 MPG RPUSD1 MIR3177 NUBP2 C16orf59 DNASE1L2 PRSS29P TMEM204 RPS2 SNHG19 RPL3L SSTR5 LOC105371047 FBXL16 NME3 TRAF7 EME2 TBC1D24 AXIN1 MIR1225 LINC00254 NDUFB10 PTX4 LOC105371049 HBA1 BRICD5 MCRIP2 ERVK13-1 SYNGR3 MEIOB TMEM8A KCTD5 SNRNP25 FAHD1 SSTR5-AS1 MIR5587 TSR3 CAPN15 MIR940 PRSS27 SPSB3 MIR6859-4 TELO2 FLJ42627 ABCA17P PKD1 PGP LOC107987233 SLC9A3R2 SNORA10 CACNA1H FAM173A PRR25 SOX8 CCDC154 NARFL RPL23AP5 MIR6767 RAB40C HN1L HBA2 LOC652276 MIR3677 NPRL3 IGFALS LMF1 CCDC78 HAGHL BAIAP3 GFER MIR3180-5 SNORA64 LOC729652 IFT140 POLR3K TBL3 LOC101929280 WASIR2 WDR24 LOC105371184 TPSB2 METTL26 HBQ1 CRAMP1 TPSD1 AMDHD2 C16orf91 ZNF598 MSLN FAM234A METRN LOC105371038 UBE2I RGS11 MAPK8IP3 MIR6511B1 UNKL NOXO1 LOC105371046 CCNF TPSAB1 WFIKKN1 PRR35 MIR3178 ARHGDIG MRPS34 CEMP1 STUB1 JMJD8 PIGQ SNORA78 NTHL1 ABCA3 C1QTNF8 MLST8 CHTF18 LOC100287175 HS3ST6 WDR90
esv3892756 Chr.16:1764390 - 1780436 on Build GRCh38 Loss MAPK8IP3 NME3 SPSB3 EME2 MRPS34
nsv1160328 Chr.16:1704619 - 1797867 on Build GRCh38 Deletion MIR3177 MAPK8IP3 IGFALS NME3 NUBP2 SPSB3 EME2 MRPS34
nsv571171 Chr.16:1757779 - 1804539 on Build GRCh38 Gain+Loss MAPK8IP3 IGFALS NME3 NUBP2 SPSB3 EME2 MRPS34
dgv4856n54 Chr.16:1600945 - 1813519 on Build GRCh38 Loss MIR3177 MAPK8IP3 IGFALS NUBP2 LOC105371046 MRPS34 CRAMP1 HAGH NME3 HN1L SPSB3 EME2 IFT140
nsv471069 Chr.16:1754356 - 1791032 on Build GRCh38 Loss MAPK8IP3 IGFALS NME3 NUBP2 SPSB3 EME2 MRPS34
nsv1051692 Chr.16:1505070 - 1866102 on Build GRCh38 Loss MIR3177 MAPK8IP3 IGFALS NUBP2 MEIOB LOC105371046 FAHD1 TMEM204 MRPS34 CRAMP1 HAGH LOC105371047 NME3 HN1L SPSB3 EME2 TELO2 IFT140
nsv827500 Chr.16:1761258 - 1795126 on Build GRCh38 Gain MAPK8IP3 IGFALS NME3 NUBP2 SPSB3 EME2 MRPS34
nsv518641 Chr.16:1645775 - 1835631 on Build GRCh38 Loss MIR3177 MAPK8IP3 IGFALS NUBP2 MEIOB FAHD1 MRPS34 CRAMP1 HAGH NME3 HN1L SPSB3 EME2
nsv571173 Chr.16:1767596 - 1780436 on Build GRCh38 Loss MAPK8IP3 NME3 SPSB3 EME2 MRPS34
nsv952900 Chr.16:1724500 - 1827999 on Build GRCh38 Deletion HAGH MIR3177 MAPK8IP3 IGFALS NME3 NUBP2 SPSB3 EME2 FAHD1 MRPS34
nsv571170 Chr.16:1752231 - 1791032 on Build GRCh38 Loss MAPK8IP3 IGFALS NME3 NUBP2 SPSB3 EME2 MRPS34

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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