Hs01681254_cn

• Gene Symbol: LOC339059
• Assay Reference Genome Location: Chr.16:88743318 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 339059
• Gene Name: uncharacterized LOC339059
• Gene Aliases: -
• Location: Chr.16:88742767-88745748 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC339059	NR_120387.1	1	552
	AK097767.1	1	552	BAC05165.1
	BC111769.1	1	498	AAI11770.1

Target Gene Details

• Entrez Gene ID: 9780
• Gene Name: piezo type mechanosensitive ion channel component 1
• Gene Aliases: DHS, FAM38A, LMPH3, Mib
• Location: Chr.16:88715338-88785220 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PIEZO1	NM_001142864.3			NP_001136336.2
	HY165228.1
	KC602455.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	LOC105371409 LINC00304 SLC22A31 LOC100129697 CTU2 ACSF3 CDT1 ZNF778 LOC100289580 LOC339059 CDH15 LOC107987238 APRT GALNS LOC400558 TRAPPC2L PIEZO1 PABPN1L LOC101927793 CBFA2T3 MIR4722
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	LOC339059 SNAI3 MVD SNAI3-AS1 CYBA CTU2 PIEZO1 RNF166 MIR4722 LOC100289580
dgv3064n100	Chr.16:88683753 - 88846491 on Build GRCh38	Gain	LOC339059 SNAI3 LOC107987238 APRT GALNS SNAI3-AS1 CTU2 PIEZO1 RNF166 CDT1 MIR4722 LOC100289580
nsv517643	Chr.16:88713767 - 88756339 on Build GRCh38	Loss	LOC339059 CTU2 PIEZO1 MIR4722 LOC100289580
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	LOC339059 SNAI3 SNAI3-AS1 CTU2 PIEZO1 RNF166 MIR4722 LOC100289580
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	LOC105371409 LINC00304 SLC22A31 LOC100129697 LOC105371414 ANKRD11 ACSF3 CDT1 ZNF778 LOC100289580 LOC339059 CDH15 LOC107987238 LOC100287036 APRT GALNS LOC400558 TRAPPC2L PIEZO1 PABPN1L LOC101927793 CBFA2T3
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	LOC105371409 ZNF276 CENPBD1 VPS9D1 LOC100289580 CDH15 GAS8 LOC100287036 APRT TUBB3 CDK10 SPATA2L VPS9D1-AS1 DPEP1 CYBA TCF25 CTU2 SNORD68 SNAI3-AS1 LOC105371419 PABPN1L CBFA2T3 MIR4722 LINC00304 SLC22A31 MVD LOC105371414 RNF166 CDT1 ZNF778 LOC339059 SNAI3 LOC107987238 TUBB8P7 SPG7 LOC400558 LOC101927793 DEF8 FAM157C DBNDD1 LOC100129697 CPNE7 CHMP1A ANKRD11 MC1R ACSF3 PRDM7 FANCA LOC107984817 GALNS RPL13 SPIRE2 LOC101927817 URAHP AFG3L1P TRAPPC2L GAS8-AS1 PIEZO1 IL17C SPATA33
nsv1927	Chr.16:88712585 - 88743583 on Build GRCh38	Insertion	LOC339059 CTU2 PIEZO1 MIR4722 LOC100289580
nsv471114	Chr.16:88688461 - 88756339 on Build GRCh38	Gain	LOC339059 CTU2 PIEZO1 RNF166 MIR4722 LOC100289580
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	MVD CYBA ZC3H18 CTU2 RNF166 LOC100289580 LOC339059 LOC107984862 SNAI3 MIR5189 SNAI3-AS1 PIEZO1 ZNF469 IL17C ZFPM1 MIR4722 ZC3H18-AS1
nsv1160442	Chr.16:88708161 - 88778524 on Build GRCh38	Deletion	LOC339059 CTU2 PIEZO1 MIR4722 LOC100289580
nsv1061256	Chr.16:88711587 - 89013365 on Build GRCh38	Gain	LOC105371409 LOC100129697 CTU2 CDT1 LOC100289580 LOC339059 LOC107987238 APRT GALNS TRAPPC2L PIEZO1 PABPN1L LOC101927793 CBFA2T3 MIR4722
nsv573675	Chr.16:88740797 - 88743485 on Build GRCh38	Loss	LOC339059 PIEZO1 LOC100289580

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cation transport
positive regulation of integrin activation
positive regulation of cell-cell adhesion mediated by integrin
cation transmembrane transport

Function(s)

cation channel activity
mechanically-gated ion channel activity