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Gene Symbol
TRIM40
Assay Reference Genome
Location

Chr.6:30137274 on build GRCh38
Cytoband
6p22.1
Assay ID Hs01681840_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 135644

Gene Name:

 tripartite motif containing 40

Gene Aliases:

 RNF35

Location:

 Chr.6:30135998-30148773 on Build GRCh38

Assay Gene Location:

 Within Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM40 NM_001286633.1 2 624 NP_001273562.1
NM_138700.4 1 542 NP_619645.1
XM_011514305.1 2 1055 XP_011512607.1
XM_011514306.1 3 921 XP_011512608.1
XM_011514308.1 2 1055 XP_011512610.1
XM_011514309.1 2 1055 XP_011512611.1
AF489517.1 1 265 AAM09503.1
BC060785.1 2 624 AAH60785.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion SFTA2 LOC105375014 HLA-B PPP1R18 DDR1 OR2H2 DPCR1 GABBR1 CCHCR1 HLA-L HCG18 MIR877 TCF19 GNL1 TRIM31 PPP1R11 HCG4 HLA-G HLA-K TRIM40 PSORS1C2 OR10C1 SNORD32B PSORS1C1 OR11A1 LINC01015 TUBB HCG27 TRIM39 VARS2 ATAT1 MAS1L LINC00243 OR2H1 MIR6891 TRIM31-AS1 IER3 ZNRD1ASP CDSN HCG4B ZFP57 C6orf15 RPP21 GTF2H4 HCG8 MRPS18B PPP1R10 RNF39 TRIM15 MIR4640 HLA-E MOG ABCF1 MUC22 POU5F1 MDC1 DHX16 HCG17 HLA-A TRIM10 HCG22 FLOT1 OR12D2 OR14J1 MDC1-AS1 OR5V1 HCG9 C6orf136 HLA-C LOC101929006 OR2J2 MUC21 TRIM26 HLA-F-AS1 HLA-F UBD HLA-H PRR3 TRIM39-RPP21 MICA IFITM4P ZNRD1 OR12D3 LOC554223 NRM PSORS1C3 HLA-J HCG20
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion SFTA2 LINC00533 OR2W1 LOC105375014 PPP1R18 DDR1 OR2H2 DPCR1 GABBR1 CCHCR1 HLA-L HCG18 LINC01623 MIR877 TCF19 GNL1 OR2B3 TRIM31 PPP1R11 HCG4 HLA-G HLA-K ZNF311 TRIM40 PSORS1C2 OR10C1 SNORD32B PSORS1C1 OR11A1 LINC01015 OR2J3 TUBB HCG27 TRIM39 VARS2 ATAT1 MAS1L LINC00243 OR2H1 TRIM31-AS1 IER3 ZNRD1ASP CDSN HCG4B ZFP57 C6orf15 RPP21 GTF2H4 HCG8 MRPS18B PPP1R10 RNF39 TRIM15 MIR4640 HLA-E MOG HCG14 ABCF1 MUC22 POU5F1 MDC1 HCG16 DHX16 HCG17 LOC100129636 HLA-A TRIM10 HCG22 FLOT1 OR12D2 OR14J1 MDC1-AS1 OR5V1 HCG9 C6orf136 LOC101929006 OR2J2 MUC21 TRIM26 HLA-F-AS1 HLA-F UBD HLA-H TRIM27 PRR3 TRIM39-RPP21 IFITM4P ZNRD1 OR12D3 LOC554223 NRM PSORS1C3 HLA-J LINC01556 HCG20
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion SFTA2 LOC105375014 PPP1R18 DDR1 DPCR1 CCHCR1 HLA-L HCG18 MIR877 TCF19 GNL1 TRIM31 PPP1R11 HCG4 HLA-G HLA-K TRIM40 PSORS1C2 PSORS1C1 TUBB HCG27 TRIM39 VARS2 ATAT1 LINC00243 TRIM31-AS1 IER3 ZNRD1ASP CDSN HCG4B C6orf15 RPP21 GTF2H4 HCG8 MRPS18B PPP1R10 RNF39 TRIM15 MIR4640 HLA-E ABCF1 MUC22 POU5F1 MDC1 DHX16 HCG17 HLA-A TRIM10 HCG22 FLOT1 MDC1-AS1 HCG9 C6orf136 HLA-C MUC21 TRIM26 HLA-F-AS1 HLA-F HLA-H PRR3 TRIM39-RPP21 IFITM4P ZNRD1 LOC554223 NRM PSORS1C3 HLA-J HCG20
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss SFTA2 LOC105375014 PPP1R18 DDR1 DPCR1 CCHCR1 HLA-L HCG18 MIR877 TCF19 GNL1 TRIM31 PPP1R11 HLA-K TRIM40 PSORS1C2 PSORS1C1 TUBB HCG27 TRIM39 VARS2 ATAT1 LINC00243 TRIM31-AS1 IER3 ZNRD1ASP CDSN HCG4B C6orf15 RPP21 GTF2H4 HCG8 MRPS18B PPP1R10 RNF39 TRIM15 MIR4640 HLA-E ABCF1 MUC22 POU5F1 MDC1 DHX16 HCG17 HLA-A TRIM10 HCG22 FLOT1 MDC1-AS1 HCG9 C6orf136 HLA-C MUC21 TRIM26 HLA-H PRR3 TRIM39-RPP21 ZNRD1 NRM PSORS1C3 HLA-J HCG20
esv2731777 Chr.6:29943636 - 30260756 on Build GRCh38 Deletion HCG9 HCG8 TRIM26 RNF39 TRIM15 HLA-L TRIM31 PPP1R11 HCG17 TRIM31-AS1 HLA-A ZNRD1 TRIM10 TRIM40 ZNRD1ASP HLA-J
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication SFTA2 LOC105375014 HLA-B PPP1R18 DDR1 DPCR1 CCHCR1 HLA-L HCG18 MIR877 TCF19 GNL1 TRIM31 PPP1R11 TRIM40 PSORS1C2 LOC102725068 PSORS1C1 HCP5 TUBB HCG27 TRIM39 VARS2 ATAT1 LINC00243 MIR6891 TRIM31-AS1 IER3 ZNRD1ASP CDSN HCG26 C6orf15 RPP21 GTF2H4 HCG8 MRPS18B PPP1R10 RNF39 TRIM15 MIR4640 HLA-E ABCF1 MUC22 POU5F1 MDC1 DHX16 HCG17 TRIM10 HCG22 FLOT1 MDC1-AS1 C6orf136 HLA-C MUC21 TRIM26 PRR3 TRIM39-RPP21 MICA ZNRD1 NRM PSORS1C3 HLA-J HCG20

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More Information


Additional Information:

For this assay, SNP(s) [rs76945432] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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