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See other AGPAT1 CNV Assays ›
Gene Symbol
AGPAT1
Assay Reference Genome
Location

Chr.6:32170007 on build GRCh38
Cytoband
6p21.32
Assay ID Hs01687186_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10554

Gene Name:

 1-acylglycerol-3-phosphate O-acyltransferase 1

Gene Aliases:

 1-AGPAT1, G15, LPAAT-alpha, LPAATA

Location:

 Chr.6:32168206-32178111 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 8 - Intron 9
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGPAT1 NM_006411.3 NP_006402.1
NM_032741.4 NP_116130.2
XM_005248805.3 XP_005248862.1
XM_005248806.2 XP_005248863.1
XM_011514234.1 XP_011512536.1
AF007145.1 AAC19153.1
AF218034.1 AAG17276.1
AK056346.1
AK058025.1
AK129818.1
AK299252.1
AK315950.1
BC002402.2 AAH02402.1
BC003007.1 AAH03007.1
BC004310.1 AAH04310.1
BC090849.1 AAH90849.1
U56417.1 AAB58775.1
U75971.1 AAB96378.1
Y09565.1 CAA70758.1

Target Gene Details

Entrez Gene ID:

 102466190

Gene Name:

 microRNA 6721

Gene Aliases:

 hsa-mir-6721, mir-6721

Location:

 Chr.6:32170030-32170116 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MIR6721 NR_106779.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss GPSM3 NOTCH4 RNF5 AGER MIR6721 PPT2-EGFL8 TNXB ATF6B PPT2 PBX2 AGPAT1 PRRT1 EGFL8 LOC100507547 FKBPL MIR6833
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss GPSM3 TNXA CYP21A1P BTNL2 STK19 HSPA1B TNXB HCG23 DXO C4A C4B AGPAT1 SLC44A4 PRRT1 FKBPL HSPA1A NELFE NOTCH4 SNORD48 LOC101929163 HLA-DRB1 C2-AS1 HLA-DQA1 C6orf10 PPT2 MIR1236 EHMT2 SNORD52 HLA-DRB5 ZBTB12 CFB SKIV2L MIR6721 HLA-DQB1 HLA-DRA ATF6B C6orf48 EGFL8 LOC100507547 RNF5 HLA-DQB1-AS1 AGER CYP21A2 PPT2-EGFL8 HLA-DRB6 PBX2 NEU1 C2 MIR6833
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss GPSM3 TNXA MIR6721 CYP21A1P BTNL2 HLA-DQB1 HLA-DRA TNXB HCG23 ATF6B HLA-DQB2 HLA-DQA2 C4A C4B AGPAT1 PRRT1 EGFL8 LOC100507547 FKBPL NOTCH4 RNF5 LOC101929163 HLA-DQB1-AS1 AGER MIR3135B HLA-DRB1 CYP21A2 PPT2-EGFL8 HLA-DRB6 HLA-DQA1 C6orf10 PPT2 PBX2 HLA-DRB5 MIR6833
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss CFB GPSM3 TNXA SKIV2L MIR6721 CYP21A1P STK19 TNXB ATF6B DXO C4A C4B AGPAT1 PRRT1 EGFL8 LOC100507547 FKBPL NELFE NOTCH4 RNF5 AGER C2-AS1 CYP21A2 PPT2-EGFL8 PPT2 PBX2 C2 MIR1236 MIR6833
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion GPSM3 TNXA VARS LY6G6F LY6G5B CYP21A1P BTNL2 LY6G6E STK19 MCCD1 DDX39B-AS1 AIF1 HSPA1B SNORD117 TNXB C6orf25 HCG23 MIR4646 DXO MSH5 C4A C4B MIR6832 AGPAT1 SLC44A4 PRRT1 ABHD16A FKBPL HSPA1A NELFE SNORD84 NOTCH4 SNORD48 LOC101929163 HLA-DRB1 C2-AS1 HCP5 LY6G5C BAG6 CLIC1 LY6G6C C6orf10 MICB PPT2 MSH5-SAPCD1 MIR1236 EHMT2 LOC100287329 SNORD52 HLA-DRB5 ZBTB12 CFB SAPCD1 SKIV2L NFKBIL1 DDAH2 MIR6721 HLA-DRA APOM ATF6B LST1 C6orf48 PRRC2A EGFL8 DDX39B LOC100507547 SNORA38 TNF LOC102725068 NCR3 RNF5 ATP6V1G2-DDX39B AGER LTA CYP21A2 SAPCD1-AS1 C6orf47 HCG26 PPT2-EGFL8 GPANK1 ATP6V1G2 HLA-DRB6 CSNK2B LY6G6D LSM2 PBX2 NEU1 VWA7 C2 LTB HSPA1L MIR6833
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion GPSM3 PSMB8-AS1 TNXA VARS ZBTB22 PPP1R2P1 DDX39B-AS1 TNXB C6orf25 HLA-DQB2 MIR4646 DAXX DXO MSH5 RING1 MIR6832 AGPAT1 SLC44A4 PRRT1 HLA-DMA TAPBP ABHD16A HLA-DPB1 HSPA1A NELFE SNORD84 NOTCH4 MIR3135B C2-AS1 HLA-DOA HLA-DQA1 TAP2 C6orf10 MIR5004 MIR6873 MSH5-SAPCD1 EHMT2 LOC100287329 SNORD52 HLA-DRB5 PFDN6 SAPCD1 SKIV2L APOM ATF6B LST1 C6orf48 HLA-DOB B3GALT4 PRRC2A SNORA38 ATP6V1G2-DDX39B HLA-DQB1-AS1 LTA CYP21A2 SAPCD1-AS1 PPT2-EGFL8 ATP6V1G2 COL11A2 LY6G6D LSM2 HLA-DPA1 PBX2 HLA-DMB RPS18 MIR6833 LY6G6F LY6G5B CYP21A1P BTNL2 LY6G6E STK19 MCCD1 PHF1 AIF1 HSPA1B HCG24 SNORD117 MIR219A1 WDR46 HCG23 PSMB9 C4A C4B HLA-DPB2 PSMB8 RXRB FKBPL BRD2 CUTA SNORD48 LOC101929163 HLA-DRB1 HCP5 LY6G5C BAG6 CLIC1 LY6G6C MIR6834 MICB HSD17B8 PPT2 SLC39A7 ZBTB9 MIR1236 ZBTB12 CFB NFKBIL1 DDAH2 MIR6721 SYNGAP1 HLA-DQB1 HLA-DRA HLA-DQA2 LOC100294145 EGFL8 DDX39B LOC100507547 TNF LOC102725068 NCR3 RNF5 AGER TAP1 C6orf47 HCG26 GPANK1 HLA-DRB6 CSNK2B KIFC1 HCG25 NEU1 RGL2 VWA7 C2 LTB HSPA1L VPS52
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss GPSM3 NOTCH4 RNF5 AGER MIR6721 PPT2-EGFL8 TNXB ATF6B PPT2 PBX2 AGPAT1 PRRT1 EGFL8 LOC100507547 FKBPL MIR6833
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion GPSM3 PSMB8-AS1 TNXA VARS ZBTB22 PPP1R2P1 DDX39B-AS1 TNXB C6orf25 HLA-DQB2 MIR4646 DAXX DXO MSH5 RING1 MIR6832 AGPAT1 SLC44A4 PRRT1 HLA-DMA TAPBP ABHD16A HLA-DPB1 HSPA1A NELFE SNORD84 NOTCH4 MIR3135B C2-AS1 HLA-DOA HLA-DQA1 TAP2 C6orf10 MIR5004 MIR6873 MSH5-SAPCD1 EHMT2 LOC100287329 SNORD52 HLA-DRB5 PFDN6 SAPCD1 SKIV2L APOM ATF6B LST1 C6orf48 HLA-DOB B3GALT4 PRRC2A SNORA38 ATP6V1G2-DDX39B HLA-DQB1-AS1 LTA CYP21A2 SAPCD1-AS1 PPT2-EGFL8 ATP6V1G2 COL11A2 LY6G6D LSM2 HLA-DPA1 PBX2 HLA-DMB RPS18 MIR6833 LY6G6F LY6G5B CYP21A1P BTNL2 LY6G6E STK19 MCCD1 PHF1 AIF1 HSPA1B HCG24 SNORD117 MIR219A1 WDR46 HCG23 PSMB9 C4A C4B HLA-DPB2 PSMB8 RXRB FKBPL BRD2 CUTA SNORD48 LOC101929163 HLA-DRB1 HCP5 LY6G5C BAG6 CLIC1 LY6G6C MIR6834 MICB HSD17B8 PPT2 SLC39A7 ZBTB9 MIR1236 ZBTB12 CFB NFKBIL1 DDAH2 MIR6721 SYNGAP1 HLA-DQB1 HLA-DRA HLA-DQA2 LOC100294145 EGFL8 DDX39B LOC100507547 TNF LOC102725068 NCR3 RNF5 AGER TAP1 C6orf47 HCG26 GPANK1 HLA-DRB6 CSNK2B KIFC1 HCG25 NEU1 RGL2 VWA7 C2 LTB HSPA1L VPS52
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss GPSM3 TNXA VARS LY6G6F LY6G5B CYP21A1P BTNL2 LY6G6E STK19 MCCD1 DDX39B-AS1 AIF1 HSPA1B SNORD117 TNXB C6orf25 HCG23 MIR4646 DXO MSH5 C4A C4B MIR6832 AGPAT1 SLC44A4 PRRT1 ABHD16A FKBPL HSPA1A NELFE SNORD84 NOTCH4 SNORD48 LOC101929163 C2-AS1 HCP5 LY6G5C BAG6 CLIC1 LY6G6C C6orf10 MICB PPT2 MSH5-SAPCD1 MIR1236 EHMT2 LOC100287329 SNORD52 ZBTB12 CFB SAPCD1 SKIV2L NFKBIL1 DDAH2 MIR6721 HLA-B HLA-DRA APOM ATF6B LST1 MIR6891 C6orf48 PRRC2A EGFL8 DDX39B LOC100507547 MICA SNORA38 TNF LOC102725068 NCR3 RNF5 ATP6V1G2-DDX39B AGER LTA CYP21A2 SAPCD1-AS1 C6orf47 HCG26 PPT2-EGFL8 GPANK1 ATP6V1G2 CSNK2B LY6G6D LSM2 PBX2 NEU1 VWA7 C2 LTB HSPA1L MIR6833

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