Name: [Hs01691261_cn] [PHF1]
Creator: Thermo Fisher Scientific
Keywords: [PHF1] Assay, [PHD finger protein 1] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	5252
Gene Name:	PHD finger protein 1
Gene Aliases:	MTF2L2, PCL1, PHF2, TDRD19C, hPHF1
Location:	Chr.6:33410751-33416453 on Build GRCh38
Assay Gene Location:	Overlaps Exon 6 - Intron 6

Gene Symbol	Transcript Accession	Protein ID
PHF1	NM_002636.4	NP_002627.1
	NM_024165.2	NP_077084.1
	NR_027692.1
	XM_011514662.1	XP_011512964.1
	XM_011514663.1	XP_011512965.1
	XM_011514664.1	XP_011512966.1
	XM_011514665.1	XP_011512967.1
	XM_011514666.1	XP_011512968.1
	XM_011514669.1	XP_011512971.1
	XM_011514670.2	XP_011512972.1
	XM_017010939.1	XP_016866428.1
	AF029678.1	AAC52062.1
	AF052205.1	AAC13273.1
	AK225913.1
	AK295412.1
	AK299162.1
	AK316499.1
	BC008834.2	AAH08834.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv830637	Chr.6:33361588 - 33542927 on Build GRCh38	Loss	SYNGAP1 KIFC1 CUTA ZBTB9 PHF1 MIR5004
nsv830635	Chr.6:33270228 - 33446010 on Build GRCh38	Loss	KIFC1 TAPBP MIR6834 MIR6873 CUTA PHF1 RPS18 WDR46 SYNGAP1 B3GALT4 DAXX PFDN6 ZBTB22 MIR5004 VPS52 RGL2
nsv1073969	Chr.6:31456422 - 33480523 on Build GRCh38	Deletion	MIR6721 LY6G6C TAPBP HCG25 WDR46 VWA7 RXRB HLA-DRB1 HLA-DMB ZBTB22 LY6G6F HLA-DQB1 RGL2 CSNK2B LY6G5B COL11A2 CFB SNORD84 CYP21A2 SAPCD1-AS1 EHMT2 SNORD48 MIR6833 HCG23 SNORD52 HSPA1B HCG24 MSH5-SAPCD1 CUTA DXO RPS18 PBX2 TNXB HCP5 SNORD117 PPT2-EGFL8 C2-AS1 DAXX TAP2 MIR1236 MIR5004 ATF6B DDX39B HLA-DRA VPS52 ATP6V1G2-DDX39B HLA-DPA1 DDX39B-AS1 PRRT1 TAP1 STK19 NFKBIL1 PHF1 C6orf10 C6orf47 HCG26 LOC101929163 PPP1R2P1 HLA-DQB1-AS1 PSMB8 SLC44A4 LY6G6E TNF AGPAT1 HSD17B8 TNXA MIR6832 C2 LOC100507547 SAPCD1 BTNL2 HLA-DRB6 GPANK1 SKIV2L SYNGAP1 LTB LOC100294145 MIR4646 ZBTB12 PRRC2A HLA-DPB1 BRD2 MIR219A1 VARS LY6G6D HLA-DQA1 HLA-DQB2 HLA-DPB2 FKBPL HLA-DQA2 PSMB9 BAG6 ABHD16A LY6G5C HSPA1L MICB PSMB8-AS1 NEU1 LSM2 AIF1 CLIC1 PFDN6 ZBTB9 ATP6V1G2 MSH5 EGFL8 KIFC1 C4A NCR3 MIR6873 C6orf48 LTA AGER MIR3135B HSPA1A RNF5 PPT2 LST1 DDAH2 LOC100287329 C4B CYP21A1P HLA-DMA RING1 NELFE MIR6834 LOC102725068 APOM HLA-DOA C6orf25 B3GALT4 GPSM3 MCCD1 SNORA38 HLA-DRB5 NOTCH4 SLC39A7 HLA-DOB
nsv1112900	Chr.6:31455323 - 33480423 on Build GRCh38	Deletion	MIR6721 LY6G6C TAPBP HCG25 WDR46 VWA7 RXRB HLA-DRB1 HLA-DMB ZBTB22 LY6G6F HLA-DQB1 RGL2 CSNK2B LY6G5B COL11A2 CFB SNORD84 CYP21A2 SAPCD1-AS1 EHMT2 SNORD48 MIR6833 HCG23 SNORD52 HSPA1B HCG24 MSH5-SAPCD1 CUTA DXO RPS18 PBX2 TNXB HCP5 SNORD117 PPT2-EGFL8 C2-AS1 DAXX TAP2 MIR1236 MIR5004 ATF6B DDX39B HLA-DRA VPS52 ATP6V1G2-DDX39B HLA-DPA1 DDX39B-AS1 PRRT1 TAP1 STK19 NFKBIL1 PHF1 C6orf10 C6orf47 HCG26 LOC101929163 PPP1R2P1 HLA-DQB1-AS1 PSMB8 SLC44A4 LY6G6E TNF AGPAT1 HSD17B8 TNXA MIR6832 C2 LOC100507547 SAPCD1 BTNL2 HLA-DRB6 GPANK1 SKIV2L SYNGAP1 LTB LOC100294145 MIR4646 ZBTB12 PRRC2A HLA-DPB1 BRD2 MIR219A1 VARS LY6G6D HLA-DQA1 HLA-DQB2 HLA-DPB2 FKBPL HLA-DQA2 PSMB9 BAG6 ABHD16A LY6G5C HSPA1L MICB PSMB8-AS1 NEU1 LSM2 AIF1 CLIC1 PFDN6 ZBTB9 ATP6V1G2 MSH5 EGFL8 KIFC1 C4A NCR3 MIR6873 C6orf48 LTA AGER MIR3135B HSPA1A RNF5 PPT2 LST1 DDAH2 LOC100287329 C4B CYP21A1P HLA-DMA RING1 NELFE MIR6834 LOC102725068 APOM HLA-DOA C6orf25 B3GALT4 GPSM3 MCCD1 SNORA38 HLA-DRB5 NOTCH4 SLC39A7 HLA-DOB
nsv1119076	Chr.6:32595823 - 33480623 on Build GRCh38	Deletion	HSD17B8 KIFC1 TAPBP HCG24 MIR6873 CUTA HCG25 RPS18 WDR46 MIR3135B SYNGAP1 RXRB LOC100294145 HLA-DMB DAXX TAP2 ZBTB22 MIR5004 HLA-DQB1 VPS52 RGL2 HLA-DPB1 BRD2 MIR219A1 COL11A2 HLA-DPA1 HLA-DMA HLA-DQA1 HLA-DQB2 HLA-DPB2 RING1 TAP1 HLA-DQA2 MIR6834 PHF1 PSMB9 HLA-DOA PSMB8-AS1 B3GALT4 PPP1R2P1 HLA-DQB1-AS1 PFDN6 ZBTB9 PSMB8 SLC39A7 HLA-DOB