Name: [Hs01691261_cn] [PHF1]
Creator: Thermo Fisher Scientific
Keywords: [PHF1] Assay, [PHD finger protein 1] Assay

Genomic Map

LOADING...

×

Back To Top

Assay Details

Target Gene Details

Entrez Gene ID:	5252
Gene Name:	PHD finger protein 1
Gene Aliases:	MTF2L2, PCL1, PHF2, TDRD19C, hPHF1
Location:	Chr.6:33410751-33416453 on Build GRCh38
Assay Gene Location:	Overlaps Exon 6 - Intron 6

Gene Symbol	Transcript Accession	Protein ID
PHF1	NM_002636.4	NP_002627.1
	NM_024165.2	NP_077084.1
	NR_027692.1
	XM_011514662.1	XP_011512964.1
	XM_011514663.1	XP_011512965.1
	XM_011514664.1	XP_011512966.1
	XM_011514665.1	XP_011512967.1
	XM_011514666.1	XP_011512968.1
	XM_011514669.1	XP_011512971.1
	XM_011514670.2	XP_011512972.1
	XM_017010939.1	XP_016866428.1
	AF029678.1	AAC52062.1
	AF052205.1	AAC13273.1
	AK225913.1
	AK295412.1
	AK299162.1
	AK316499.1
	BC008834.2	AAH08834.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv830637	Chr.6:33361588 - 33542927 on Build GRCh38	Loss	PHF1 MIR5004 SYNGAP1 ZBTB9 CUTA KIFC1
nsv830635	Chr.6:33270228 - 33446010 on Build GRCh38	Loss	PFDN6 MIR5004 SYNGAP1 RPS18 WDR46 TAPBP MIR6873 VPS52 CUTA MIR6834 PHF1 DAXX B3GALT4 ZBTB22 RGL2 KIFC1
nsv1073969	Chr.6:31456422 - 33480523 on Build GRCh38	Deletion	TNF MIR5004 SLC44A4 MIR4646 STK19 AGER HCG24 GPANK1 PSMB9 DDX39B-AS1 SNORD48 ATP6V1G2 HLA-DRB5 HLA-DPB1 MIR3135B ATP6V1G2-DDX39B MICB RXRB TNXB SLC39A7 TAP1 MIR6721 HSPA1L DXO C6orf47 RNF5 PBX2 HLA-DQB2 NEU1 COL11A2 DDAH2 CYP21A2 LOC100507547 HLA-DQB1-AS1 HSD17B8 C4A SNORD52 PPT2 MIR6832 RPS18 HLA-DQB1 ZBTB9 WDR46 C6orf25 NCR3 HLA-DOB DDX39B BAG6 TAP2 VWA7 HLA-DRB6 LY6G5B C6orf10 HLA-DRB1 B3GALT4 RING1 PPP1R2P1 LY6G5C HLA-DMA LTB HLA-DOA HCG25 GPSM3 HLA-DRA PRRC2A HLA-DPA1 LST1 HSPA1B DAXX LOC100287329 NELFE LSM2 MIR6833 SNORD117 KIFC1 PFDN6 LOC102725068 MCCD1 VARS HLA-DPB2 FKBPL HLA-DMB SNORA38 PRRT1 APOM MSH5-SAPCD1 EGFL8 EHMT2 AGPAT1 SKIV2L ABHD16A RGL2 LY6G6C SNORD84 NFKBIL1 LTA MIR6873 LOC100294145 PPT2-EGFL8 CUTA CSNK2B HCG23 MIR6834 LOC101929163 BTNL2 HCP5 HSPA1A C4B LY6G6E MIR219A1 PSMB8 ATF6B CLIC1 CYP21A1P LY6G6D SYNGAP1 VPS52 LY6G6F NOTCH4 PHF1 SAPCD1-AS1 ZBTB12 MSH5 AIF1 ZBTB22 TAPBP PSMB8-AS1 SAPCD1 BRD2 C2 HCG26 C2-AS1 C6orf48 MIR1236 HLA-DQA2 TNXA HLA-DQA1 CFB
nsv1112900	Chr.6:31455323 - 33480423 on Build GRCh38	Deletion	TNF MIR5004 SLC44A4 MIR4646 STK19 AGER HCG24 GPANK1 PSMB9 DDX39B-AS1 SNORD48 ATP6V1G2 HLA-DRB5 HLA-DPB1 MIR3135B ATP6V1G2-DDX39B MICB RXRB TNXB SLC39A7 TAP1 MIR6721 HSPA1L DXO C6orf47 RNF5 PBX2 HLA-DQB2 NEU1 COL11A2 DDAH2 CYP21A2 LOC100507547 HLA-DQB1-AS1 HSD17B8 C4A SNORD52 PPT2 MIR6832 RPS18 HLA-DQB1 ZBTB9 WDR46 C6orf25 NCR3 HLA-DOB DDX39B BAG6 TAP2 VWA7 HLA-DRB6 LY6G5B C6orf10 HLA-DRB1 B3GALT4 RING1 PPP1R2P1 LY6G5C HLA-DMA LTB HLA-DOA HCG25 GPSM3 HLA-DRA PRRC2A HLA-DPA1 LST1 HSPA1B DAXX LOC100287329 NELFE LSM2 MIR6833 SNORD117 KIFC1 PFDN6 LOC102725068 MCCD1 VARS HLA-DPB2 FKBPL HLA-DMB SNORA38 PRRT1 APOM MSH5-SAPCD1 EGFL8 EHMT2 AGPAT1 SKIV2L ABHD16A RGL2 LY6G6C SNORD84 NFKBIL1 LTA MIR6873 LOC100294145 PPT2-EGFL8 CUTA CSNK2B HCG23 MIR6834 LOC101929163 BTNL2 HCP5 HSPA1A C4B LY6G6E MIR219A1 PSMB8 ATF6B CLIC1 CYP21A1P LY6G6D SYNGAP1 VPS52 LY6G6F NOTCH4 PHF1 SAPCD1-AS1 ZBTB12 MSH5 AIF1 ZBTB22 TAPBP PSMB8-AS1 SAPCD1 BRD2 C2 HCG26 C2-AS1 C6orf48 MIR1236 HLA-DQA2 TNXA HLA-DQA1 CFB
nsv1119076	Chr.6:32595823 - 33480623 on Build GRCh38	Deletion	PFDN6 MIR5004 SYNGAP1 RPS18 HLA-DQB1 ZBTB9 WDR46 VPS52 HLA-DOB TAP2 HLA-DPB2 HLA-DMB HCG24 PHF1 PSMB9 B3GALT4 RING1 ZBTB22 PPP1R2P1 RGL2 HLA-DMA HLA-DPB1 MIR3135B HLA-DOA HCG25 RXRB TAPBP PSMB8-AS1 MIR6873 LOC100294145 SLC39A7 BRD2 HLA-DPA1 TAP1 CUTA MIR6834 HLA-DQB2 DAXX COL11A2 HLA-DQA2 HLA-DQB1-AS1 MIR219A1 HSD17B8 HLA-DQA1 PSMB8 KIFC1