Hs01694490_cn

• Gene Symbol: CDHR5
• Assay Reference Genome Location: Chr.11:624574 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 53841
• Gene Name: cadherin related family member 5
• Gene Aliases: MLPCDH, MU-PCDH, MUCDHL, MUPCDH
• Location: Chr.11:616565-625067 on Build GRCh38
• Assay Gene Location: Overlaps Intron 2 - Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CDHR5	NM_001171968.1			NP_001165439.1
	NM_021924.4			NP_068743.2
	NM_031264.3			NP_112554.2
	XM_006718253.3			XP_006718316.1
	XM_011520188.2			XP_011518490.1
	XM_011520189.2			XP_011518491.1
	XM_011520190.2			XP_011518492.1
	XM_011520191.2			XP_011518493.1
	AF258675.1			AAG16732.1
	AF258676.1			AAG16733.1
	AF258677.1
	AF258678.1
	AF258679.1
	AF276242.1			AAG30821.1
	AF301909.1			AAG33495.1
	AK000226.1			BAA91021.1
	AK000384.1			BAA91130.1
	AK300991.1
	AK308040.1
	AK309157.1
	AY358368.1			AAQ88734.1
	BC038405.1			AAH38405.1
	DA373160.1
	DQ491193.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552865	Chr.11:612843 - 626730 on Build GRCh38	Loss	IRF7 CDHR5 SCT
dgv1522n54	Chr.11:557342 - 656845 on Build GRCh38	Loss	PHRF1 IRF7 MIR210 MIR210HG CDHR5 DRD4 LMNTD2 LOC143666 DEAF1 SCT RASSF7
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	HRAS PHRF1 IRF7 MIR210 MIR210HG CDHR5 LMNTD2 LOC143666 SCT LOC101059906 LRRC56 RASSF7
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	ANO9 PHRF1 IRF7 CDHR5 RNH1 DRD4 MUC5AC CD151 MUC5B LOC101927503 PDDC1 PNPLA2 PTDSS2 LMNTD2 MUC6 SLC25A22 DEAF1 AP2A2 RASSF7 PIDD1 MUC2 MIR6744 CHID1 CEND1 LRRC56 B4GALNT4 PANO1 HRAS EPS8L2 TSPAN4 MIR210 TOLLIP RPLP2 PKP3 MIR210HG LOC171391 SNORA52 LOC143666 TMEM80 TALDO1 SCT SIGIRR CRACR2B POLR2L LOC101059906
nsv552861	Chr.11:589246 - 662407 on Build GRCh38	Loss	PHRF1 IRF7 CDHR5 DRD4 DEAF1 SCT
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	ANO9 PHRF1 IRF7 CDHR5 RNH1 DRD4 MUC5AC CD151 MUC5B LOC101927503 PDDC1 PNPLA2 PTDSS2 LMNTD2 MUC6 SLC25A22 DEAF1 AP2A2 RASSF7 TOLLIP-AS1 PIDD1 MUC2 MIR6744 CHID1 CEND1 LRRC56 PANO1 HRAS EPS8L2 TSPAN4 MIR210 TOLLIP RPLP2 MIR210HG LOC171391 SNORA52 LOC143666 TMEM80 TALDO1 SCT SIGIRR CRACR2B POLR2L LOC101059906
esv2762889	Chr.11:606294 - 653614 on Build GRCh38	Loss	PHRF1 IRF7 CDHR5 DRD4 DEAF1 SCT
nsv1039558	Chr.11:534242 - 672091 on Build GRCh38	Gain	PHRF1 IRF7 CDHR5 DRD4 LRRC56 HRAS MIR210 MIR210HG LMNTD2 LOC143666 DEAF1 SCT RASSF7
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	PHRF1 IRF7 CDHR5 RNH1 DRD4 LRRC56 HRAS MIR210 PTDSS2 MIR210HG LMNTD2 LOC143666 DEAF1 SCT LOC101059906 RASSF7
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	ANO9 PHRF1 IRF7 CDHR5 RNH1 DRD4 CD151 PDDC1 PNPLA2 PTDSS2 LMNTD2 SLC25A22 DEAF1 AP2A2 RASSF7 PIDD1 CHID1 CEND1 LRRC56 B4GALNT4 PANO1 HRAS EPS8L2 TSPAN4 MIR210 RPLP2 PKP3 MIR210HG LOC171391 SNORA52 LOC143666 TMEM80 TALDO1 SCT SIGIRR CRACR2B POLR2L LOC101059906
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	PHRF1 IRF7 CDHR5 RNH1 DRD4 CD151 PDDC1 PNPLA2 PTDSS2 LMNTD2 SLC25A22 DEAF1 RASSF7 PIDD1 CHID1 CEND1 LRRC56 PANO1 HRAS EPS8L2 TSPAN4 MIR210 RPLP2 MIR210HG LOC171391 SNORA52 LOC143666 TMEM80 TALDO1 SCT CRACR2B POLR2L LOC101059906

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
cell differentiation
regulation of microvillus length
intermicrovillar adhesion

Function(s)

calcium ion binding
protein binding
beta-catenin binding
cell adhesion molecule binding