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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2177795 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01717467_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Exon 20
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 20 5083 NP_065815.1
AB037727.1 12 4220 BAA92544.1
AF451977.1 20 5149 AAL49758.1

Target Gene Details

Entrez Gene ID:

 84231

Gene Name:

 TNF receptor associated factor 7

Gene Aliases:

 RFWD1, RNF119

Location:

 Chr.16:2155752-2178129 on Build GRCh38

Assay Gene Location:

 Within Exon 21
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRAF7 NM_032271.2 21 3333 NP_115647.2
XM_005255627.4 21 3373 XP_005255684.1
XM_011522700.1 21 3375 XP_011521002.1
AL136921.1 20 3229 CAB66855.1
AW245178.1
AY569455.1 20 3286 AAS68363.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication RPL3L MIR4717 IFT140 MIR662 E4F1 MIR3178 HBQ1 SSTR5-AS1 MSRB1 RAB40C PRR25 NDUFB10 NHLRC4 AMDHD2 HAGHL NPW CCNF MRPL28 LMF1-AS1 STUB1 ABCA3 PRSS27 LOC105371045 METTL26 LOC106660606 RHBDF1 PGP SSTR5 PRSS29P LOC100134368 BRICD5 NME3 ZNF598 AXIN1 C16orf91 SLC9A3R2 RAB11FIP3 MLST8 HBA2 WDR90 HBM LINC00235 LOC105371047 UNKL SOX8 LOC101929280 FLJ42627 ABCA17P MIR1225 TPSAB1 RPUSD1 CHTF18 FAM173A ECI1 MPG LINC00254 LOC729652 MAPK8IP3 MIR3176 RPS2 ATP6V0C PDIA2 CEMP1 GFER GNPTG PKD1 MIR6768 TMEM204 LUC7L FBXL16 SPSB3 TSR3 METRN RHOT2 MRPS34 MIR6767 RGS11 DDX11L10 LOC105371038 FAHD1 CASKIN1 FAM234A TRAF7 LOC105371046 MIR6511B1 C16orf59 CRAMP1 NUBP2 CCDC78 RNF151 TELO2 POLR3K SNORA10 NTN3 C1QTNF8 HN1L UBE2I EME2 RHBDL1 SNORA78 BAIAP3 LOC100287175 MIR3677 SNHG9 TMEM8A LOC105371049 PDPK1 PIGQ SNORD60 TBC1D24 MIR6859-4 MCRIP2 RPL23AP5 HAGH NPRL3 LMF1 SNRNP25 NME4 NOXO1 SNHG19 MIR4516 CACNA1H TPSB2 WDR24 NTHL1 SNORA64 CCDC154 MIR3177 MEIOB ARHGDIG IGFALS MIR3180-5 RNPS1 TSC2 SYNGR3 TPSG1 TBL3 LOC107987233 DNASE1L2 LOC652276 HBZ PRR35 MSLN MIR5587 WASIR2 TPSD1 CAPN15 HBA1 JMJD8 LOC105371184 CLCN7 KCTD5 LOC107984876 RAB26 DECR2 NARFL HS3ST6 MIR940 PTX4 GNG13 ERVK13-1 WFIKKN1
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss MIR6511B1 E4F1 MIR1225 MIR3180-5 RNPS1 ECI1 TSC2 SYNGR3 TBL3 NPW DNASE1L2 LOC105371049 GFER SNORD60 PKD1 PGP NOXO1 BRICD5 SNHG19 ZNF598 MIR4516 SLC9A3R2 RAB26 MLST8 NTHL1 CASKIN1 TRAF7
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss MIR6511B1 LOC105371049 SNORD60 PKD1 PGP E4F1 MIR1225 MIR3180-5 ECI1 BRICD5 SNHG19 MIR4516 TSC2 RAB26 MLST8 DNASE1L2 CASKIN1 TRAF7
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss LOC106660606 SNORD60 PGP E4F1 RNPS1 ECI1 BRICD5 SNHG19 RAB26 MLST8 DNASE1L2 MIR3677 MIR940 CASKIN1 TRAF7
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss MIR6511B1 LOC105371049 MIR4516 TSC2 SNORD60 PKD1 RAB26 MIR1225 MIR3180-5 CASKIN1 TRAF7 SNHG19
nsv827511 Chr.16:2177743 - 2178224 on Build GRCh38 Gain CASKIN1 TRAF7
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain CASKIN1 TRAF7
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR4717 MIR6511B1 C16orf59 E4F1 ABCA17P MIR1225 MIR3178 MIR3180-5 RNPS1 ECI1 LOC729652 NTN3 TSC2 ATP6V0C AMDHD2 CCNF DNASE1L2 MIR3677 LOC652276 ABCA3 CEMP1 LOC105371049 PDPK1 LOC106660606 SNORD60 PKD1 TBC1D24 MIR6768 PGP BRICD5 SNHG19 MIR4516 MIR6767 RAB26 MLST8 MIR940 CASKIN1 TRAF7
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss LOC106660606 PGP E4F1 MLST8 DNASE1L2 MIR3677 MIR940 CASKIN1 RNPS1 TRAF7 ECI1 BRICD5
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion MIR4717 LOC106660606 SNORD60 PGP E4F1 RNPS1 ECI1 BRICD5 SNHG19 RAB26 MLST8 DNASE1L2 MIR3677 MIR940 CASKIN1 ABCA3 TRAF7

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