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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2177795 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01717467_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Exon 20
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 20 5083 NP_065815.1
AB037727.1 12 4220 BAA92544.1
AF451977.1 20 5149 AAL49758.1

Target Gene Details

Entrez Gene ID:

 84231

Gene Name:

 TNF receptor associated factor 7

Gene Aliases:

 RFWD1, RNF119

Location:

 Chr.16:2155752-2178129 on Build GRCh38

Assay Gene Location:

 Within Exon 21
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRAF7 NM_032271.2 21 3333 NP_115647.2
XM_005255627.4 21 3373 XP_005255684.1
XM_011522700.1 21 3375 XP_011521002.1
AL136921.1 20 3229 CAB66855.1
AW245178.1
AY569455.1 20 3286 AAS68363.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication WDR24 C1QTNF8 KCTD5 CRAMP1 WDR90 DECR2 TRAF7 LOC105371046 LMF1-AS1 GNG13 MSRB1 RPUSD1 FAHD1 LOC105371184 RHBDL1 FAM234A CHTF18 HS3ST6 LOC652276 HBZ LOC100134368 PKD1 TPSB2 HAGHL TPSD1 CCDC154 NARFL LOC107987233 PDIA2 FBXL16 DNASE1L2 ERVK13-1 GNPTG SNORA64 ATP6V0C MIR6859-4 HBA2 AMDHD2 PRR35 RAB26 PTX4 C16orf91 TPSG1 RGS11 CLCN7 PGP SOX8 NUBP2 HBM POLR3K TBC1D24 RPL3L JMJD8 METTL26 RHBDF1 MIR3178 RNPS1 CACNA1H NOXO1 MIR5587 FAM173A SNORA10 HBA1 ABCA3 MIR3176 MRPS34 MIR6767 ABCA17P CASKIN1 TELO2 RAB40C LOC105371038 SPSB3 TMEM204 LINC00254 NPW LOC100287175 MIR940 MSLN LINC00235 ZNF598 PIGQ MPG MIR6511B1 PRSS27 TSR3 MCRIP2 IGFALS CCDC78 MLST8 MAPK8IP3 NTN3 MIR4717 RPL23AP5 NHLRC4 SSTR5 SNHG9 SNHG19 RPS2 LOC101929280 ARHGDIG WASIR2 RNF151 MIR1225 NME3 LOC105371045 UNKL RAB11FIP3 LOC105371049 CEMP1 STUB1 SLC9A3R2 TMEM8A WFIKKN1 AXIN1 LOC106660606 MIR4516 GFER PRSS29P MIR6768 PRR25 BAIAP3 DDX11L10 BRICD5 CAPN15 SNRNP25 LOC105371047 SYNGR3 METRN MRPL28 NTHL1 LUC7L RHOT2 LOC107984876 E4F1 UBE2I SSTR5-AS1 HN1L MIR3677 IFT140 MIR3180-5 FLJ42627 HAGH TSC2 TPSAB1 LMF1 NPRL3 MIR3177 TBL3 CCNF C16orf59 MIR662 ECI1 HBQ1 SNORD60 PDPK1 SNORA78 NDUFB10 LOC729652 EME2 NME4 MEIOB
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss LOC106660606 MIR4516 GFER TRAF7 RAB26 NPW MIR940 BRICD5 ZNF598 PGP SYNGR3 MIR6511B1 NTHL1 MLST8 MIR4717 E4F1 MIR3677 PKD1 MIR3180-5 TSC2 SNHG19 RNPS1 NOXO1 TBL3 MIR1225 ECI1 ABCA3 SNORD60 DNASE1L2 CASKIN1 LOC105371049 SLC9A3R2
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss MIR4516 TRAF7 RAB26 PKD1 MIR3180-5 TSC2 SNHG19 BRICD5 PGP MIR1225 ECI1 MIR6511B1 SNORD60 MLST8 DNASE1L2 CASKIN1 LOC105371049 E4F1
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss MIR3677 LOC106660606 TRAF7 RAB26 MIR940 SNHG19 RNPS1 BRICD5 PGP ECI1 SNORD60 MLST8 DNASE1L2 CASKIN1 E4F1
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss MIR1225 MIR6511B1 MIR4516 TRAF7 RAB26 PKD1 SNORD60 MIR3180-5 TSC2 SNHG19 CASKIN1 LOC105371049
nsv827511 Chr.16:2177743 - 2178224 on Build GRCh38 Gain TRAF7 CASKIN1
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain TRAF7 CASKIN1
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss MIR3677 ECI1 LOC106660606 TRAF7 MLST8 DNASE1L2 MIR940 CASKIN1 RNPS1 BRICD5 E4F1 PGP
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain LOC106660606 MIR4516 AMDHD2 TRAF7 RAB26 MIR6768 MIR940 BRICD5 PGP MIR6511B1 MLST8 TBC1D24 NTN3 MIR4717 LOC652276 E4F1 MIR3677 PKD1 MIR3180-5 TSC2 MIR3178 SNHG19 RNPS1 CCNF C16orf59 MIR1225 ECI1 ABCA3 SNORD60 PDPK1 DNASE1L2 MIR6767 LOC729652 ABCA17P CASKIN1 LOC105371049 CEMP1 ATP6V0C
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion MIR3677 LOC106660606 TRAF7 RAB26 MIR940 SNHG19 RNPS1 BRICD5 PGP ECI1 ABCA3 SNORD60 MLST8 DNASE1L2 MIR4717 CASKIN1 E4F1

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