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See other RPUSD1 CNV Assays ›
Gene Symbol
RPUSD1
Assay Reference Genome
Location

Chr.16:785123 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01735137_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 113000

Gene Name:

 RNA pseudouridylate synthase domain containing 1

Gene Aliases:

 C16orf40, RLUCL

Location:

 Chr.16:784974-788383 on Build GRCh38

Assay Gene Location:

 Within Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RPUSD1 NM_001324086.1 6 1910 NP_001311015.1
NM_001324410.1 6 1811 NP_001311339.1
NM_001324411.1 5 1798 NP_001311340.1
NM_001324412.1 5 1712 NP_001311341.1
NM_001324413.1 6 1802 NP_001311342.1
NM_001324414.1 6 1858 NP_001311343.1
NM_001324415.1 6 1911 NP_001311344.1
NM_058192.2 6 1901 NP_478072.1
BC011783.2 5 1766 AAH11783.1
BC012951.2 2 1401 AAH12951.2
CB529100.1 1 167

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4828n54 Chr.16:760143 - 828324 on Build GRCh38 Gain MSLN RPUSD1 PRR25 GNG13 CHTF18 MIR662
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain MSLN RPUSD1 PRR25 GNG13 CHTF18 MIR662
nsv817712 Chr.16:774098 - 810673 on Build GRCh38 Loss RPUSD1 PRR25 GNG13 CHTF18
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication FAM173A TSC2 SNORA64 MPG MRPL28 IFT140 LOC106660606 MIR3180-5 PIGQ SLC9A3R2 NHLRC4 PRSS29P CAPN15 RAB11FIP3 UBE2I TSR3 LOC729652 MLST8 HBA2 LOC101929280 SPSB3 PKD1 LMF1-AS1 FAM234A E4F1 NTN3 LOC105371046 PDIA2 GFER JMJD8 RHOT2 RHBDF1 TRAF7 LOC652276 BRICD5 CCDC154 MIR4516 TPSB2 LUC7L SNORA78 NME4 SNHG9 HS3ST6 ARHGDIG PGP ABCA17P CACNA1H FAHD1 LOC100134368 METRN FBXL16 MIR6511B1 RHBDL1 AMDHD2 TPSD1 ECI1 SYNGR3 DDX11L10 ERVK13-1 LOC105371184 RPL3L HAGH MSLN MIR4717 C1QTNF8 NUBP2 STUB1 MRPS34 LOC107987233 PRR35 LOC105371038 HBQ1 MEIOB NARFL MIR3176 MIR6859-4 METTL26 ABCA3 NPW WDR90 LINC00235 MSRB1 TPSG1 NME3 TELO2 NTHL1 NOXO1 LMF1 SNORA10 MIR5587 PRR25 LOC105371049 GNG13 MIR6767 CHTF18 DNASE1L2 RNPS1 HBZ CLCN7 MIR940 NDUFB10 DECR2 LINC00254 FLJ42627 MIR662 CEMP1 HBA1 SNRNP25 SSTR5-AS1 MCRIP2 ZNF598 CCDC78 LOC100287175 MAPK8IP3 EME2 LOC107984876 TMEM8A RPUSD1 MIR3177 RGS11 PTX4 RPS2 POLR3K CASKIN1 IGFALS MIR3178 ATP6V0C CCNF WDR24 GNPTG BAIAP3 TMEM204 KCTD5 PDPK1 CRAMP1 SNORD60 C16orf59 HAGHL LOC105371047 TBL3 SOX8 MIR6768 SNHG19 RAB26 RNF151 HN1L MIR1225 TPSAB1 C16orf91 WFIKKN1 MIR3677 RAB40C UNKL NPRL3 TBC1D24 WASIR2 LOC105371045 RPL23AP5 HBM AXIN1 PRSS27 SSTR5
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss FAM173A RPUSD1 PIGQ NHLRC4 CAPN15 RAB11FIP3 METRN MIR5587 WDR24 FBXL16 RHBDL1 PRR25 GNG13 CHTF18 HAGHL LOC105371184 MSLN LOC101929280 WFIKKN1 STUB1 LOC107987233 PRR35 MIR662 LOC105371038 RAB40C NARFL MIR3176 METTL26 JMJD8 RHOT2 WDR90 MCRIP2 CCDC78 LINC00235 LOC100287175
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss MSLN FAM173A RPUSD1 STUB1 MIR662 LOC105371038 METRN NARFL WDR24 FBXL16 RHBDL1 JMJD8 RHOT2 WDR90 GNG13 MCRIP2 CCDC78 CHTF18 HAGHL LOC100287175 LOC105371184
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss FAM173A RPUSD1 PIGQ NHLRC4 CAPN15 RAB11FIP3 METRN MIR5587 WDR24 FBXL16 RHBDL1 PRR25 GNG13 CHTF18 HAGHL LOC105371184 MSLN LOC101929280 WFIKKN1 STUB1 LOC107987233 PRR35 MIR662 LOC105371038 RAB40C NARFL MIR3176 METTL26 JMJD8 RHOT2 WDR90 MCRIP2 CCDC78 LINC00235 LOC100287175
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion FAM173A RPUSD1 PIGQ NHLRC4 CAPN15 RAB11FIP3 LMF1 METRN MIR5587 WDR24 FBXL16 RHBDL1 PRR25 GNG13 CHTF18 HAGHL LOC105371184 SOX8 MSLN LOC101929280 C1QTNF8 LMF1-AS1 WFIKKN1 STUB1 LOC107987233 PRR35 MIR662 LOC105371038 RAB40C NARFL MIR3176 METTL26 JMJD8 RHOT2 SSTR5-AS1 WDR90 MCRIP2 CCDC78 LINC00235 LOC100287175 LOC107984876 SSTR5
nsv457312 Chr.16:760039 - 797743 on Build GRCh38 Loss MSLN RPUSD1 CHTF18 MIR662
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication FAM173A RPUSD1 PIGQ METRN WDR24 FBXL16 RHBDL1 GNG13 CHTF18 HAGHL LOC105371184 MSLN LOC101929280 WFIKKN1 STUB1 MIR662 LOC105371038 RAB40C NARFL METTL26 JMJD8 RHOT2 WDR90 MCRIP2 CCDC78 LOC100287175
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication FAM173A RPUSD1 PIGQ NHLRC4 CAPN15 RAB11FIP3 METRN MIR5587 WDR24 FBXL16 RHBDL1 PRR25 GNG13 CHTF18 HAGHL LOC105371184 MSLN LOC101929280 WFIKKN1 STUB1 LOC107987233 PRR35 MIR662 LOC105371038 RAB40C NARFL MIR3176 METTL26 JMJD8 RHOT2 WDR90 MCRIP2 CCDC78 LINC00235 LOC100287175

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More Information


Additional Information:

For this assay, SNP(s) [rs116189618,rs73491293] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


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