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See other PHF1 CNV Assays ›
Gene Symbol
PHF1
Assay Reference Genome
Location

Chr.6:33412297 on build GRCh38
Cytoband
6p21.32
Assay ID Hs01736177_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 5252

Gene Name:

 PHD finger protein 1

Gene Aliases:

 MTF2L2, PCL1, PHF2, TDRD19C, hPHF1

Location:

 Chr.6:33410751-33416453 on Build GRCh38

Assay Gene Location:

 Within Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PHF1 NM_002636.4 2 270 NP_002627.1
NM_024165.2 2 270 NP_077084.1
NR_027692.1 2 270
XM_011514662.1 2 187 XP_011512964.1
XM_011514663.1 2 187 XP_011512965.1
XM_011514664.1 2 187 XP_011512966.1
XM_011514665.1 2 187 XP_011512967.1
XM_011514666.1 2 187 XP_011512968.1
XM_011514669.1 2 187 XP_011512971.1
XM_011514670.2 2 187 XP_011512972.1
XM_017010939.1 XP_016866428.1
AF029678.1 2 90 AAC52062.1
AF052205.1 2 86 AAC13273.1
AK225913.1 2 238
AK295412.1 2 140
AK316499.1 2 221
BC008834.2 2 238 AAH08834.1
DA065298.1 2 268
DA872118.1 2 275

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830637 Chr.6:33361588 - 33542927 on Build GRCh38 Loss KIFC1 SYNGAP1 MIR5004 CUTA PHF1 ZBTB9
nsv830635 Chr.6:33270228 - 33446010 on Build GRCh38 Loss RGL2 KIFC1 TAPBP WDR46 B3GALT4 MIR6834 PFDN6 RPS18 ZBTB22 SYNGAP1 MIR5004 MIR6873 VPS52 CUTA DAXX PHF1
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion SNORD48 C2 PSMB8 LST1 C6orf25 HCP5 EGFL8 PPT2-EGFL8 TNF HCG23 PPT2 ABHD16A MIR1236 LOC101929163 DAXX TNXA TAPBP NFKBIL1 HCG24 RING1 B3GALT4 COL11A2 AIF1 LOC102725068 MIR219A1 HSD17B8 SNORD52 MIR6833 PRRC2A NOTCH4 CSNK2B CYP21A2 HLA-DRA LY6G5B HLA-DOB ATF6B PRRT1 MCCD1 PSMB9 HLA-DMB LY6G6D HLA-DRB1 RNF5 ZBTB22 ATP6V1G2-DDX39B LOC100294145 SYNGAP1 HLA-DOA CYP21A1P SLC44A4 LTA HLA-DPB2 RXRB HLA-DQB1-AS1 RPS18 VARS SNORD117 NEU1 HSPA1A LY6G6F C2-AS1 NCR3 HLA-DPB1 LY6G6C CUTA APOM C6orf47 BRD2 PHF1 RGL2 SLC39A7 DDAH2 BTNL2 EHMT2 TAP2 DDX39B HSPA1B GPSM3 DDX39B-AS1 LOC100507547 FKBPL ZBTB12 VWA7 VPS52 LOC100287329 PSMB8-AS1 HLA-DQB1 WDR46 TNXB MSH5-SAPCD1 HLA-DQB2 CLIC1 HCG26 MIR4646 MIR6834 HLA-DQA1 SKIV2L HSPA1L SNORD84 AGER LY6G5C C4B LTB PBX2 ATP6V1G2 HCG25 TAP1 DXO KIFC1 BAG6 C6orf10 HLA-DPA1 C6orf48 MSH5 MIR3135B PFDN6 MIR6721 LY6G6E MIR5004 MIR6873 HLA-DRB5 HLA-DRB6 PPP1R2P1 STK19 MICB C4A GPANK1 ZBTB9 NELFE SNORA38 MIR6832 HLA-DQA2 SAPCD1-AS1 LSM2 HLA-DMA CFB SAPCD1 AGPAT1
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion SNORD48 C2 PSMB8 LST1 C6orf25 HCP5 EGFL8 PPT2-EGFL8 TNF HCG23 PPT2 ABHD16A MIR1236 LOC101929163 DAXX TNXA TAPBP NFKBIL1 HCG24 RING1 B3GALT4 COL11A2 AIF1 LOC102725068 MIR219A1 HSD17B8 SNORD52 MIR6833 PRRC2A NOTCH4 CSNK2B CYP21A2 HLA-DRA LY6G5B HLA-DOB ATF6B PRRT1 MCCD1 PSMB9 HLA-DMB LY6G6D HLA-DRB1 RNF5 ZBTB22 ATP6V1G2-DDX39B LOC100294145 SYNGAP1 HLA-DOA CYP21A1P SLC44A4 LTA HLA-DPB2 RXRB HLA-DQB1-AS1 RPS18 VARS SNORD117 NEU1 HSPA1A LY6G6F C2-AS1 NCR3 HLA-DPB1 LY6G6C CUTA APOM C6orf47 BRD2 PHF1 RGL2 SLC39A7 DDAH2 BTNL2 EHMT2 TAP2 DDX39B HSPA1B GPSM3 DDX39B-AS1 LOC100507547 FKBPL ZBTB12 VWA7 VPS52 LOC100287329 PSMB8-AS1 HLA-DQB1 WDR46 TNXB MSH5-SAPCD1 HLA-DQB2 CLIC1 HCG26 MIR4646 MIR6834 HLA-DQA1 SKIV2L HSPA1L SNORD84 AGER LY6G5C C4B LTB PBX2 ATP6V1G2 HCG25 TAP1 DXO KIFC1 BAG6 C6orf10 HLA-DPA1 C6orf48 MSH5 MIR3135B PFDN6 MIR6721 LY6G6E MIR5004 MIR6873 HLA-DRB5 HLA-DRB6 PPP1R2P1 STK19 MICB C4A GPANK1 ZBTB9 NELFE SNORA38 MIR6832 HLA-DQA2 SAPCD1-AS1 LSM2 HLA-DMA CFB SAPCD1 AGPAT1
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion RGL2 SLC39A7 KIFC1 HLA-DOB PSMB8 HLA-DPA1 TAP2 MIR3135B PFDN6 PSMB9 HLA-DMB ZBTB22 LOC100294145 SYNGAP1 MIR5004 MIR6873 HLA-DOA VPS52 PPP1R2P1 DAXX ZBTB9 PSMB8-AS1 HLA-DQB1 TAPBP WDR46 HLA-DPB2 RXRB HCG24 HLA-DQA2 RING1 HLA-DQB2 B3GALT4 COL11A2 MIR6834 HLA-DQB1-AS1 HLA-DQA1 RPS18 MIR219A1 HLA-DMA HSD17B8 HLA-DPB1 CUTA HCG25 BRD2 PHF1 TAP1

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