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See other PHF1 CNV Assays ›
Gene Symbol
PHF1
Assay Reference Genome
Location

Chr.6:33412297 on build GRCh38
Cytoband
6p21.32
Assay ID Hs01736177_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 5252

Gene Name:

 PHD finger protein 1

Gene Aliases:

 MTF2L2, PCL1, PHF2, TDRD19C, hPHF1

Location:

 Chr.6:33410751-33416453 on Build GRCh38

Assay Gene Location:

 Within Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PHF1 NM_002636.4 2 270 NP_002627.1
NM_024165.2 2 270 NP_077084.1
NR_027692.1 2 270
XM_011514662.1 2 187 XP_011512964.1
XM_011514663.1 2 187 XP_011512965.1
XM_011514664.1 2 187 XP_011512966.1
XM_011514665.1 2 187 XP_011512967.1
XM_011514666.1 2 187 XP_011512968.1
XM_011514669.1 2 187 XP_011512971.1
XM_011514670.2 2 187 XP_011512972.1
XM_017010939.1 XP_016866428.1
AF029678.1 2 90 AAC52062.1
AF052205.1 2 86 AAC13273.1
AK225913.1 2 238
AK295412.1 2 140
AK316499.1 2 221
BC008834.2 2 238 AAH08834.1
DA065298.1 2 268
DA872118.1 2 275

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830637 Chr.6:33361588 - 33542927 on Build GRCh38 Loss CUTA MIR5004 KIFC1 SYNGAP1 PHF1 ZBTB9
nsv830635 Chr.6:33270228 - 33446010 on Build GRCh38 Loss DAXX CUTA ZBTB22 MIR5004 PFDN6 SYNGAP1 RGL2 RPS18 MIR6834 TAPBP B3GALT4 KIFC1 PHF1 WDR46 MIR6873 VPS52
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion HSPA1A HCG23 PRRT1 HLA-DOA PSMB8 MCCD1 NOTCH4 TAP1 WDR46 MIR6873 RXRB HCG26 RING1 HLA-DPB2 HCG25 SLC44A4 ZBTB22 MICB CFB C2-AS1 TAP2 AIF1 C6orf25 TNF HCP5 DDX39B KIFC1 PHF1 MIR219A1 NFKBIL1 LY6G6C DAXX LOC100294145 PRRC2A RPS18 GPANK1 LY6G6D TNXB ZBTB9 LTA CSNK2B SAPCD1-AS1 LTB C4B PSMB8-AS1 NELFE VARS CUTA SNORA38 LOC100507547 SNORD48 MIR6833 ATP6V1G2-DDX39B MIR6834 MIR1236 PPP1R2P1 TNXA B3GALT4 C2 PPT2 SNORD84 HLA-DPA1 LY6G6E LY6G5B LSM2 C4A HLA-DQB2 CLIC1 MIR4646 HLA-DQB1-AS1 HLA-DQB1 MIR6721 HLA-DRB6 SNORD52 EGFL8 LOC100287329 ATP6V1G2 HCG24 NEU1 HLA-DQA1 PSMB9 HLA-DRB1 SNORD117 BAG6 SAPCD1 SKIV2L ATF6B HLA-DMA SYNGAP1 HLA-DRB5 MIR3135B DDAH2 TAPBP RNF5 MIR6832 C6orf10 EHMT2 HSPA1L PPT2-EGFL8 CYP21A2 HLA-DPB1 ZBTB12 AGPAT1 PFDN6 CYP21A1P FKBPL ABHD16A MSH5-SAPCD1 HLA-DRA COL11A2 LOC101929163 PBX2 BRD2 HLA-DQA2 AGER LY6G6F VPS52 MSH5 NCR3 GPSM3 MIR5004 APOM DDX39B-AS1 RGL2 HSPA1B C6orf48 SLC39A7 DXO HSD17B8 STK19 BTNL2 LST1 HLA-DMB C6orf47 LOC102725068 VWA7 HLA-DOB LY6G5C
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion HSPA1A HCG23 PRRT1 HLA-DOA PSMB8 MCCD1 NOTCH4 TAP1 WDR46 MIR6873 RXRB HCG26 RING1 HLA-DPB2 HCG25 SLC44A4 ZBTB22 MICB CFB C2-AS1 TAP2 AIF1 C6orf25 TNF HCP5 DDX39B KIFC1 PHF1 MIR219A1 NFKBIL1 LY6G6C DAXX LOC100294145 PRRC2A RPS18 GPANK1 LY6G6D TNXB ZBTB9 LTA CSNK2B SAPCD1-AS1 LTB C4B PSMB8-AS1 NELFE VARS CUTA SNORA38 LOC100507547 SNORD48 MIR6833 ATP6V1G2-DDX39B MIR6834 MIR1236 PPP1R2P1 TNXA B3GALT4 C2 PPT2 SNORD84 HLA-DPA1 LY6G6E LY6G5B LSM2 C4A HLA-DQB2 CLIC1 MIR4646 HLA-DQB1-AS1 HLA-DQB1 MIR6721 HLA-DRB6 SNORD52 EGFL8 LOC100287329 ATP6V1G2 HCG24 NEU1 HLA-DQA1 PSMB9 HLA-DRB1 SNORD117 BAG6 SAPCD1 SKIV2L ATF6B HLA-DMA SYNGAP1 HLA-DRB5 MIR3135B DDAH2 TAPBP RNF5 MIR6832 C6orf10 EHMT2 HSPA1L PPT2-EGFL8 CYP21A2 HLA-DPB1 ZBTB12 AGPAT1 PFDN6 CYP21A1P FKBPL ABHD16A MSH5-SAPCD1 HLA-DRA COL11A2 LOC101929163 PBX2 BRD2 HLA-DQA2 AGER LY6G6F VPS52 MSH5 NCR3 GPSM3 MIR5004 APOM DDX39B-AS1 RGL2 HSPA1B C6orf48 SLC39A7 DXO HSD17B8 STK19 BTNL2 LST1 HLA-DMB C6orf47 LOC102725068 VWA7 HLA-DOB LY6G5C
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion HLA-DQB2 DAXX HLA-DOA PFDN6 HLA-DQB1-AS1 LOC100294145 HLA-DQB1 RPS18 PSMB8 HCG24 HLA-DQA1 PSMB9 COL11A2 TAP1 WDR46 ZBTB9 MIR6873 RXRB BRD2 HLA-DQA2 VPS52 RING1 PSMB8-AS1 HLA-DPB2 HCG25 CUTA ZBTB22 HLA-DMA MIR5004 SYNGAP1 MIR3135B RGL2 TAP2 MIR6834 SLC39A7 TAPBP PPP1R2P1 HSD17B8 B3GALT4 KIFC1 PHF1 HLA-DMB HLA-DPA1 HLA-DOB MIR219A1 HLA-DPB1

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