Genomic Map
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Target Gene Details
Entrez Gene ID: | 3978 |
Gene Name: | DNA ligase 1 |
Gene Aliases: |
- |
Location: |
Chr.19:48115445-48170603 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 21 - Exon 21 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| LIG1 | NM_000234.2 | NP_000225.1 | ||
| NM_001289063.1 | NP_001275992.1 | |||
| NM_001289064.1 | NP_001275993.1 | |||
| NM_001320970.1 | NP_001307899.1 | |||
| NM_001320971.1 | NP_001307900.1 | |||
| NR_110296.1 | ||||
| NR_135497.1 | ||||
| NR_135498.1 | ||||
| NR_135499.1 | ||||
| NR_135500.1 | ||||
| NR_135501.1 | ||||
| XM_017026809.1 | XP_016882298.1 | |||
| AB208791.1 | BAD92028.1 | |||
| AK225863.1 | ||||
| AK297296.1 | ||||
| AK300370.1 | ||||
| AK300607.1 | ||||
| AK314210.1 | ||||
| BC108318.1 | AAI08319.1 | |||
| BC110622.2 | AAI10623.1 | |||
| M36067.1 | AAA59518.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv833853 | Chr.19:47982539 - 48184317 on Build GRCh38 | Loss |
 PLA2G4C
BSPH1
C19orf68
PLA2G4C-AS1
ELSPBP1
CABP5
LIG1
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
IL4I1
MIR6799
SNORD35B
PTOV1-AS1
NTN5
DBP
SYNGR4
BCL2L12
HSD17B14
CARD8
RRAS
NOSIP
SNAR-A1
PPFIA3
FUT2
MIR4749
SNAR-A13
FAM83E
PTH2
MAMSTR
FLT3LG
LOC100287477
RPS11
PLA2G4C-AS1
CPT1C
SULT2B1
ZNF114
MIR6800
DHDH
NUP62
KCNJ14
SNAR-A7
SNAR-C4
SNAR-G2
CD37
CYTH2
KDELR1
SNORD34
SNORD35A
RPL18
CGB1
MIR4751
SIGLEC11
PRMT1
PLA2G4C
SPHK2
FUT1
IZUMO1
SCAF1
SIGLEC16
NUCB1
SEC1P
C19orf68
TRPM4
RUVBL2
CABP5
NTF4
LOC101059948
C19orf73
BAX
MIR6798
CGB2
ADM5
CGB5
SNAR-C2
RPL13A
CA11
LOC101928295
SNAR-D
SNAR-C3
PTOV1
MIR4324
CGB8
SNAR-A14
GRWD1
SNAR-A10
PIH1D1
GFY
ELSPBP1
LHB
ALDH16A1
TBC1D17
VRK3
PRRG2
BSPH1
CGB7
SNAR-A11
KCNA7
CARD8-AS1
FGF21
NUCB1-AS1
SNAR-B2
LIN7B
SNAR-B1
SNAR-C5
FLJ26850
SNAR-G1
SNAR-A12
DKKL1
MIR5088
SNORD32A
HRC
ATF5
TSKS
SNAR-C1
SNAR-A9
MIR4750
RASIP1
TEAD2
CGB3
ZNF473
SNAR-A4
GRIN2D
SNAR-A6
PTOV1-AS2
SNORD33
LOC105447645
SNAR-A8
LMTK3
PRR12
PLEKHA4
TMEM143
RCN3
CCDC155
CCDC114
SLC6A16
SPACA4
FCGRT
PNKP
MED25
IRF3
MIR150
AKT1S1
FUZ
TULP2
SNAR-A3
SLC17A7
EMP3
LIG1
GYS1
FTL
LOC105372430
PPP1R15A
SNAR-A2
AP2A1
SNRNP70
BCAT2
SNAR-A5
|
| esv34181 | Chr.19:48009377 - 48416682 on Build GRCh38 | Loss |
C19orf68
GRIN2D
EMP3
PLA2G4C-AS1
ELSPBP1
CABP5
LIG1
TMEM143
ZNF114
CCDC114
SYNGR4
PLA2G4C
CARD8
CARD8-AS1
KDELR1
|
| nsv953596 | Chr.19:48120744 - 48134943 on Build GRCh38 | Deletion |
LIG1
|
Back To TopMore Information
Set Membership: |
Intragenic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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