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See other PPT2 CNV Assays ›
Gene Symbol
PPT2
Assay Reference Genome
Location

Chr.6:32163046 on build GRCh38
Cytoband
6p21.32
Assay ID Hs01764900_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 9374

Gene Name:

 palmitoyl-protein thioesterase 2

Gene Aliases:

 C6orf8, G14, PPT-2

Location:

 Chr.6:32153452-32163681 on Build GRCh38

Assay Gene Location:

 Within Exon 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PPT2 NM_001204103.1 9 1409 NP_001191032.1
NM_005155.6 9 1419 NP_005146.4
NM_138717.2 9 1198 NP_619731.2
AF020543.1 9 1364 AAB80730.1
AL110128.1 9 1126 CAB53659.1
BC001355.2 9 1233 AAH01355.1
CR533546.1 CAG38577.1
Y17958.1 9 1313 CAB46981.1

Target Gene Details

Entrez Gene ID:

 100532746

Gene Name:

 PPT2-EGFL8 readthrough (NMD candidate)

Gene Aliases:

 -

Location:

 Chr.6:32153999-32168285 on Build GRCh38

Assay Gene Location:

 Within Intron 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PPT2-EGFL8 NR_037861.1
AB209572.1 BAD92809.1
AF020544.1 AAB80731.1
AK290473.1
AK296648.1
AK307427.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss LOC100507547 PPT2 PBX2 MIR6721 GPSM3 AGER TNXB ATF6B NOTCH4 RNF5 MIR6833 PPT2-EGFL8 FKBPL AGPAT1 EGFL8 PRRT1
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss PPT2 PBX2 C4B LOC101929163 ATF6B HSPA1A C2 LOC100507547 HCG23 HLA-DQB1 MIR6721 TNXB HLA-DRA STK19 HLA-DQB1-AS1 HSPA1B HLA-DRB1 MIR1236 SNORD48 C2-AS1 SNORD52 CFB GPSM3 AGER ZBTB12 HLA-DRB6 PPT2-EGFL8 C6orf48 BTNL2 C4A AGPAT1 EGFL8 HLA-DQA1 PRRT1 SKIV2L DXO HLA-DRB5 SLC44A4 NELFE TNXA NOTCH4 RNF5 CYP21A1P MIR6833 FKBPL C6orf10 NEU1 EHMT2 CYP21A2
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss PPT2 PBX2 C4B GPSM3 AGER LOC101929163 ATF6B HLA-DRB6 PPT2-EGFL8 MIR3135B HLA-DQB2 BTNL2 C4A AGPAT1 EGFL8 HLA-DQA1 PRRT1 HLA-DRB5 LOC100507547 HCG23 HLA-DQB1 MIR6721 TNXB TNXA NOTCH4 RNF5 CYP21A1P HLA-DRA MIR6833 HLA-DQB1-AS1 FKBPL C6orf10 HLA-DQA2 CYP21A2 HLA-DRB1
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss C2-AS1 PPT2 PBX2 CFB C4B GPSM3 AGER ATF6B PPT2-EGFL8 C4A AGPAT1 C2 EGFL8 PRRT1 SKIV2L DXO LOC100507547 MIR6721 TNXB NELFE TNXA NOTCH4 RNF5 CYP21A1P STK19 MIR6833 FKBPL CYP21A2 MIR1236
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion PPT2 LY6G5C LOC102725068 PBX2 C4B LY6G6F NCR3 C6orf25 LOC101929163 ATF6B LTA LST1 HSPA1A LOC100287329 C2 HSPA1L CSNK2B SAPCD1-AS1 ATP6V1G2 GPANK1 LSM2 LOC100507547 HCG23 ATP6V1G2-DDX39B MIR6721 TNXB SNORD84 LY6G6C HLA-DRA STK19 LTB BAG6 MIR4646 VARS MCCD1 MIR6832 HSPA1B LY6G6D SNORA38 HLA-DRB1 MIR1236 SNORD48 C2-AS1 AIF1 VWA7 HCG26 SNORD52 SAPCD1 CFB GPSM3 AGER MSH5 LY6G5B ZBTB12 HLA-DRB6 PPT2-EGFL8 C6orf48 BTNL2 DDAH2 C4A AGPAT1 CLIC1 EGFL8 C6orf47 PRRT1 SKIV2L NFKBIL1 DXO HLA-DRB5 DDX39B-AS1 LY6G6E SLC44A4 SNORD117 MICB NELFE TNXA ABHD16A NOTCH4 RNF5 MSH5-SAPCD1 CYP21A1P APOM MIR6833 PRRC2A FKBPL HCP5 TNF C6orf10 NEU1 EHMT2 CYP21A2 DDX39B
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion HCG24 SYNGAP1 COL11A2 PPT2 PBX2 C4B RPS18 LTA LST1 MIR3135B PFDN6 LOC100287329 C2 HSPA1L CSNK2B SAPCD1-AS1 GPANK1 HLA-DQB1 ATP6V1G2-DDX39B MIR6721 WDR46 MIR6873 LY6G6C HLA-DRA STK19 MIR4646 VARS MCCD1 PSMB8 MIR6832 TAPBP HSD17B8 MIR219A1 HLA-DPB2 HLA-DRB1 AIF1 PSMB9 PSMB8-AS1 CFB GPSM3 AGER HLA-DMA ZBTB12 HLA-DMB AGPAT1 HLA-DQA1 PRRT1 DXO DDX39B-AS1 SNORD117 MICB TNXA ABHD16A NOTCH4 RNF5 MSH5-SAPCD1 APOM MIR6833 RXRB PRRC2A HCP5 HLA-DPB1 C6orf10 HLA-DQA2 EHMT2 CYP21A2 DDX39B LY6G5C LOC102725068 LY6G6F DAXX NCR3 C6orf25 LOC101929163 ATF6B HSPA1A ZBTB9 KIFC1 PPP1R2P1 MIR6834 ATP6V1G2 LSM2 CUTA LOC100507547 HCG23 HLA-DPA1 TNXB SNORD84 ZBTB22 LTB BAG6 LOC100294145 HLA-DQB1-AS1 HSPA1B PHF1 LY6G6D HCG25 SNORA38 MIR1236 SNORD48 HLA-DOB SLC39A7 C2-AS1 BRD2 VWA7 HCG26 SNORD52 SAPCD1 MSH5 LY6G5B HLA-DRB6 MIR5004 PPT2-EGFL8 C6orf48 HLA-DQB2 BTNL2 DDAH2 TAP1 C4A CLIC1 EGFL8 C6orf47 SKIV2L NFKBIL1 RING1 RGL2 HLA-DRB5 HLA-DOA B3GALT4 VPS52 LY6G6E SLC44A4 TAP2 NELFE CYP21A1P FKBPL TNF NEU1
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss LOC100507547 PPT2 PBX2 MIR6721 GPSM3 AGER TNXB ATF6B NOTCH4 RNF5 MIR6833 PPT2-EGFL8 FKBPL AGPAT1 EGFL8 PRRT1
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion HCG24 SYNGAP1 COL11A2 PPT2 PBX2 C4B RPS18 LTA LST1 MIR3135B PFDN6 LOC100287329 C2 HSPA1L CSNK2B SAPCD1-AS1 GPANK1 HLA-DQB1 ATP6V1G2-DDX39B MIR6721 WDR46 MIR6873 LY6G6C HLA-DRA STK19 MIR4646 VARS MCCD1 PSMB8 MIR6832 TAPBP HSD17B8 MIR219A1 HLA-DPB2 HLA-DRB1 AIF1 PSMB9 PSMB8-AS1 CFB GPSM3 AGER HLA-DMA ZBTB12 HLA-DMB AGPAT1 HLA-DQA1 PRRT1 DXO DDX39B-AS1 SNORD117 MICB TNXA ABHD16A NOTCH4 RNF5 MSH5-SAPCD1 APOM MIR6833 RXRB PRRC2A HCP5 HLA-DPB1 C6orf10 HLA-DQA2 EHMT2 CYP21A2 DDX39B LY6G5C LOC102725068 LY6G6F DAXX NCR3 C6orf25 LOC101929163 ATF6B HSPA1A ZBTB9 KIFC1 PPP1R2P1 MIR6834 ATP6V1G2 LSM2 CUTA LOC100507547 HCG23 HLA-DPA1 TNXB SNORD84 ZBTB22 LTB BAG6 LOC100294145 HLA-DQB1-AS1 HSPA1B PHF1 LY6G6D HCG25 SNORA38 MIR1236 SNORD48 HLA-DOB SLC39A7 C2-AS1 BRD2 VWA7 HCG26 SNORD52 SAPCD1 MSH5 LY6G5B HLA-DRB6 MIR5004 PPT2-EGFL8 C6orf48 HLA-DQB2 BTNL2 DDAH2 TAP1 C4A CLIC1 EGFL8 C6orf47 SKIV2L NFKBIL1 RING1 RGL2 HLA-DRB5 HLA-DOA B3GALT4 VPS52 LY6G6E SLC44A4 TAP2 NELFE CYP21A1P FKBPL TNF NEU1
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss PPT2 LY6G5C LOC102725068 PBX2 C4B LY6G6F NCR3 C6orf25 LOC101929163 ATF6B LTA LST1 HSPA1A LOC100287329 C2 HSPA1L CSNK2B SAPCD1-AS1 ATP6V1G2 GPANK1 LSM2 LOC100507547 HCG23 ATP6V1G2-DDX39B MIR6721 TNXB MICA SNORD84 LY6G6C MIR6891 HLA-DRA STK19 LTB BAG6 MIR4646 VARS MCCD1 MIR6832 HSPA1B LY6G6D SNORA38 MIR1236 SNORD48 C2-AS1 AIF1 VWA7 HCG26 SNORD52 SAPCD1 CFB GPSM3 AGER MSH5 LY6G5B ZBTB12 PPT2-EGFL8 C6orf48 BTNL2 DDAH2 C4A AGPAT1 CLIC1 EGFL8 C6orf47 PRRT1 SKIV2L NFKBIL1 DXO DDX39B-AS1 LY6G6E SLC44A4 SNORD117 MICB NELFE TNXA ABHD16A NOTCH4 RNF5 MSH5-SAPCD1 CYP21A1P APOM MIR6833 PRRC2A FKBPL HCP5 TNF C6orf10 HLA-B NEU1 EHMT2 CYP21A2 DDX39B

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