Name: [Hs01766205_cn] [PHF1]
Creator: Thermo Fisher Scientific
Keywords: [PHF1] Assay, [PHD finger protein 1] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	5252
Gene Name:	PHD finger protein 1
Gene Aliases:	MTF2L2, PCL1, PHF2, TDRD19C, hPHF1
Location:	Chr.6:33410751-33416453 on Build GRCh38
Assay Gene Location:	Overlaps Exon 9 - Intron 9

Gene Symbol	Transcript Accession	Protein ID
PHF1	NM_002636.4	NP_002627.1
	NM_024165.2	NP_077084.1
	NR_027692.1
	XM_011514662.1	XP_011512964.1
	XM_011514663.1	XP_011512965.1
	XM_011514664.1	XP_011512966.1
	XM_011514665.1	XP_011512967.1
	XM_011514666.1	XP_011512968.1
	XM_011514669.1	XP_011512971.1
	XM_011514670.2	XP_011512972.1
	XM_017010939.1	XP_016866428.1
	AF029678.1	AAC52062.1
	AF052205.1	AAC13273.1
	AK225913.1
	AK295412.1
	AK299162.1
	AK316499.1
	BC008834.2	AAH08834.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv830637	Chr.6:33361588 - 33542927 on Build GRCh38	Loss	MIR5004 CUTA ZBTB9 KIFC1 PHF1 SYNGAP1
nsv830635	Chr.6:33270228 - 33446010 on Build GRCh38	Loss	RGL2 B3GALT4 ZBTB22 KIFC1 PHF1 RPS18 WDR46 MIR6873 MIR5004 CUTA PFDN6 TAPBP DAXX VPS52 SYNGAP1 MIR6834
nsv1073969	Chr.6:31456422 - 33480523 on Build GRCh38	Deletion	STK19 RPS18 BTNL2 EGFL8 MIR6873 HSPA1L HSPA1B CUTA SLC44A4 MCCD1 HLA-DRB5 TAPBP TNXA HCP5 HLA-DOA PSMB8-AS1 MIR6832 LOC100507547 KIFC1 MIR1236 GPANK1 C6orf25 RNF5 MIR219A1 COL11A2 CYP21A1P HCG24 HLA-DOB CYP21A2 LTA B3GALT4 CSNK2B NOTCH4 HLA-DQB1-AS1 LY6G6C HLA-DMA DDX39B C6orf47 LY6G5C VARS VWA7 PPP1R2P1 HCG26 C2-AS1 C4A LOC100287329 HLA-DRB6 EHMT2 AIF1 RING1 PRRC2A MSH5-SAPCD1 LOC101929163 LY6G6D SAPCD1-AS1 SLC39A7 PSMB8 HLA-DMB MSH5 LY6G6E C6orf48 C4B MIR4646 AGER SNORD117 ATF6B PHF1 SNORA38 CLIC1 LTB LOC102725068 PBX2 SYNGAP1 DDX39B-AS1 MIR6834 TNXB HLA-DRA RXRB SNORD84 C6orf10 HLA-DPB2 MICB TAP2 ABHD16A NFKBIL1 LSM2 HCG23 HSPA1A MIR5004 C2 PFDN6 CFB DAXX VPS52 PPT2 AGPAT1 HLA-DQA2 HSD17B8 HLA-DRB1 HLA-DQA1 DDAH2 ZBTB22 MIR3135B LY6G5B HLA-DPB1 ATP6V1G2 PSMB9 BAG6 LST1 SNORD52 PPT2-EGFL8 MIR6833 ATP6V1G2-DDX39B MIR6721 TAP1 APOM RGL2 BRD2 ZBTB9 SAPCD1 ZBTB12 LY6G6F HLA-DQB1 WDR46 HCG25 GPSM3 FKBPL DXO PRRT1 NEU1 SKIV2L HLA-DQB2 HLA-DPA1 TNF LOC100294145 NELFE SNORD48 NCR3
nsv1112900	Chr.6:31455323 - 33480423 on Build GRCh38	Deletion	STK19 RPS18 BTNL2 EGFL8 MIR6873 HSPA1L HSPA1B CUTA SLC44A4 MCCD1 HLA-DRB5 TAPBP TNXA HCP5 HLA-DOA PSMB8-AS1 MIR6832 LOC100507547 KIFC1 MIR1236 GPANK1 C6orf25 RNF5 MIR219A1 COL11A2 CYP21A1P HCG24 HLA-DOB CYP21A2 LTA B3GALT4 CSNK2B NOTCH4 HLA-DQB1-AS1 LY6G6C HLA-DMA DDX39B C6orf47 LY6G5C VARS VWA7 PPP1R2P1 HCG26 C2-AS1 C4A LOC100287329 HLA-DRB6 EHMT2 AIF1 RING1 PRRC2A MSH5-SAPCD1 LOC101929163 LY6G6D SAPCD1-AS1 SLC39A7 PSMB8 HLA-DMB MSH5 LY6G6E C6orf48 C4B MIR4646 AGER SNORD117 ATF6B PHF1 SNORA38 CLIC1 LTB LOC102725068 PBX2 SYNGAP1 DDX39B-AS1 MIR6834 TNXB HLA-DRA RXRB SNORD84 C6orf10 HLA-DPB2 MICB TAP2 ABHD16A NFKBIL1 LSM2 HCG23 HSPA1A MIR5004 C2 PFDN6 CFB DAXX VPS52 PPT2 AGPAT1 HLA-DQA2 HSD17B8 HLA-DRB1 HLA-DQA1 DDAH2 ZBTB22 MIR3135B LY6G5B HLA-DPB1 ATP6V1G2 PSMB9 BAG6 LST1 SNORD52 PPT2-EGFL8 MIR6833 ATP6V1G2-DDX39B MIR6721 TAP1 APOM RGL2 BRD2 ZBTB9 SAPCD1 ZBTB12 LY6G6F HLA-DQB1 WDR46 HCG25 GPSM3 FKBPL DXO PRRT1 NEU1 SKIV2L HLA-DQB2 HLA-DPA1 TNF LOC100294145 NELFE SNORD48 NCR3
nsv1119076	Chr.6:32595823 - 33480623 on Build GRCh38	Deletion	HLA-DOB HLA-DQA1 B3GALT4 HLA-DQB1-AS1 ZBTB22 HLA-DMA MIR3135B PHF1 RPS18 HLA-DPB1 MIR6873 PPP1R2P1 PSMB9 CUTA TAPBP SYNGAP1 MIR6834 TAP1 HLA-DOA PSMB8-AS1 RXRB RGL2 BRD2 ZBTB9 HLA-DPB2 KIFC1 RING1 HLA-DQB1 WDR46 HCG25 TAP2 MIR5004 PFDN6 MIR219A1 SLC39A7 COL11A2 DAXX VPS52 HLA-DQA2 HLA-DQB2 PSMB8 HLA-DMB HSD17B8 HCG24 HLA-DPA1 LOC100294145