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See other PPT2 CNV Assays ›
Gene Symbol
PPT2
Assay Reference Genome
Location

Chr.6:32162812 on build GRCh38
Cytoband
6p21.32
Assay ID Hs01790100_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 9374

Gene Name:

 palmitoyl-protein thioesterase 2

Gene Aliases:

 C6orf8, G14, PPT-2

Location:

 Chr.6:32153452-32163681 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 9 - Exon 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PPT2 NM_001204103.1 NP_001191032.1
NM_005155.6 NP_005146.4
NM_138717.2 NP_619731.2
AF020543.1 AAB80730.1
AL110128.1 CAB53659.1
BC001355.2 AAH01355.1
CR533546.1 CAG38577.1
Y17958.1 CAB46981.1

Target Gene Details

Entrez Gene ID:

 100532746

Gene Name:

 PPT2-EGFL8 readthrough (NMD candidate)

Gene Aliases:

 -

Location:

 Chr.6:32153999-32168285 on Build GRCh38

Assay Gene Location:

 Within Intron 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PPT2-EGFL8 NR_037861.1
AB209572.1 BAD92809.1
AF020544.1 AAB80731.1
AK290473.1
AK296648.1
AK307427.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss LOC100507547 EGFL8 ATF6B FKBPL GPSM3 TNXB NOTCH4 RNF5 AGER PBX2 PPT2-EGFL8 AGPAT1 MIR6833 PRRT1 PPT2 MIR6721
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss CYP21A1P C2 GPSM3 TNXB NOTCH4 BTNL2 RNF5 HLA-DRB6 PPT2 C4A C4B LOC100507547 HLA-DRB5 SLC44A4 FKBPL ZBTB12 EHMT2 SKIV2L HLA-DQB1-AS1 AGPAT1 HSPA1A MIR6721 HLA-DQA1 HLA-DRA CFB ATF6B HLA-DRB1 NELFE AGER PBX2 TNXA PPT2-EGFL8 SNORD52 MIR6833 C6orf10 PRRT1 MIR1236 HLA-DQB1 HSPA1B EGFL8 NEU1 CYP21A2 SNORD48 LOC101929163 HCG23 STK19 C2-AS1 DXO C6orf48
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss MIR3135B HLA-DQA1 HLA-DQA2 CYP21A1P HLA-DRA ATF6B GPSM3 HLA-DRB1 TNXB NOTCH4 BTNL2 RNF5 AGER PBX2 TNXA PPT2-EGFL8 MIR6833 HLA-DRB6 C6orf10 PRRT1 HLA-DQB1 PPT2 HLA-DQB2 C4A C4B LOC100507547 EGFL8 HLA-DRB5 FKBPL CYP21A2 LOC101929163 HCG23 HLA-DQB1-AS1 AGPAT1 MIR6721
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss CYP21A1P CFB ATF6B C2 GPSM3 TNXB NOTCH4 RNF5 NELFE AGER PBX2 TNXA PPT2-EGFL8 MIR6833 PRRT1 MIR1236 PPT2 C4A C4B LOC100507547 EGFL8 FKBPL CYP21A2 SKIV2L STK19 AGPAT1 C2-AS1 DXO MIR6721
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion C6orf47 CYP21A1P HCP5 VWA7 SNORD117 C2 LY6G5C CLIC1 GPSM3 LOC100287329 LTB TNXB NOTCH4 BTNL2 RNF5 NFKBIL1 LY6G5B LTA SAPCD1 MCCD1 DDX39B HLA-DRB6 PPT2 LY6G6D PRRC2A C4A C4B VARS LOC100507547 HLA-DRB5 SLC44A4 FKBPL HSPA1L ZBTB12 NCR3 EHMT2 SAPCD1-AS1 SKIV2L APOM HCG26 AGPAT1 C6orf25 HSPA1A ABHD16A MIR6721 BAG6 HLA-DRA ATP6V1G2-DDX39B CFB ATF6B HLA-DRB1 LOC102725068 ATP6V1G2 GPANK1 MIR6832 NELFE LY6G6F AGER PBX2 TNXA PPT2-EGFL8 MICB MSH5 TNF SNORD52 MIR6833 C6orf10 PRRT1 MIR1236 HSPA1B SNORD84 EGFL8 MIR4646 NEU1 CYP21A2 DDAH2 CSNK2B LSM2 LY6G6C LY6G6E MSH5-SAPCD1 DDX39B-AS1 LST1 AIF1 SNORD48 LOC101929163 HCG23 STK19 C2-AS1 DXO C6orf48 SNORA38
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion SYNGAP1 ZBTB9 CYP21A1P VWA7 SNORD117 LY6G5C PSMB9 RPS18 GPSM3 LOC100287329 RNF5 NFKBIL1 HLA-DOA TAPBP HLA-DPB1 SLC39A7 LY6G5B DDX39B HLA-DRB6 PSMB8 PPT2 PSMB8-AS1 PRRC2A C4A LOC100507547 HLA-DRB5 FKBPL NCR3 EHMT2 SAPCD1-AS1 RXRB APOM HCG26 HLA-DQB1-AS1 AGPAT1 HLA-DMB HLA-DPA1 MIR6721 MIR6873 MIR3135B HLA-DQA2 BAG6 HLA-DRA CFB LOC102725068 HCG24 ATP6V1G2 TAP2 GPANK1 MIR6832 AGER TNXA PPT2-EGFL8 MSH5 SNORD52 KIFC1 C6orf10 HLA-DQB2 HSPA1B MIR4646 NEU1 PPP1R2P1 DDAH2 CSNK2B LY6G6E SNORD48 STK19 C2-AS1 RGL2 SNORA38 CUTA C6orf47 HCP5 C2 CLIC1 LTB COL11A2 TNXB NOTCH4 BTNL2 LTA B3GALT4 SAPCD1 TAP1 MCCD1 LY6G6D RING1 C4B VARS VPS52 SLC44A4 HSPA1L ZBTB12 BRD2 WDR46 SKIV2L C6orf25 HSPA1A ABHD16A HLA-DOB PFDN6 HCG25 HLA-DQA1 ATP6V1G2-DDX39B ATF6B HLA-DRB1 NELFE MIR5004 LY6G6F HSD17B8 PBX2 PHF1 MICB DAXX TNF MIR6833 HLA-DPB2 PRRT1 MIR1236 HLA-DQB1 SNORD84 EGFL8 LOC100294145 MIR219A1 CYP21A2 MIR6834 LSM2 LY6G6C MSH5-SAPCD1 DDX39B-AS1 LST1 ZBTB22 AIF1 LOC101929163 HCG23 DXO C6orf48 HLA-DMA
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss LOC100507547 EGFL8 ATF6B FKBPL GPSM3 TNXB NOTCH4 RNF5 AGER PBX2 PPT2-EGFL8 AGPAT1 MIR6833 PRRT1 PPT2 MIR6721
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion SYNGAP1 ZBTB9 CYP21A1P VWA7 SNORD117 LY6G5C PSMB9 RPS18 GPSM3 LOC100287329 RNF5 NFKBIL1 HLA-DOA TAPBP HLA-DPB1 SLC39A7 LY6G5B DDX39B HLA-DRB6 PSMB8 PPT2 PSMB8-AS1 PRRC2A C4A LOC100507547 HLA-DRB5 FKBPL NCR3 EHMT2 SAPCD1-AS1 RXRB APOM HCG26 HLA-DQB1-AS1 AGPAT1 HLA-DMB HLA-DPA1 MIR6721 MIR6873 MIR3135B HLA-DQA2 BAG6 HLA-DRA CFB LOC102725068 HCG24 ATP6V1G2 TAP2 GPANK1 MIR6832 AGER TNXA PPT2-EGFL8 MSH5 SNORD52 KIFC1 C6orf10 HLA-DQB2 HSPA1B MIR4646 NEU1 PPP1R2P1 DDAH2 CSNK2B LY6G6E SNORD48 STK19 C2-AS1 RGL2 SNORA38 CUTA C6orf47 HCP5 C2 CLIC1 LTB COL11A2 TNXB NOTCH4 BTNL2 LTA B3GALT4 SAPCD1 TAP1 MCCD1 LY6G6D RING1 C4B VARS VPS52 SLC44A4 HSPA1L ZBTB12 BRD2 WDR46 SKIV2L C6orf25 HSPA1A ABHD16A HLA-DOB PFDN6 HCG25 HLA-DQA1 ATP6V1G2-DDX39B ATF6B HLA-DRB1 NELFE MIR5004 LY6G6F HSD17B8 PBX2 PHF1 MICB DAXX TNF MIR6833 HLA-DPB2 PRRT1 MIR1236 HLA-DQB1 SNORD84 EGFL8 LOC100294145 MIR219A1 CYP21A2 MIR6834 LSM2 LY6G6C MSH5-SAPCD1 DDX39B-AS1 LST1 ZBTB22 AIF1 LOC101929163 HCG23 DXO C6orf48 HLA-DMA
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss C6orf47 CYP21A1P HCP5 VWA7 SNORD117 C2 LY6G5C CLIC1 GPSM3 LOC100287329 LTB TNXB NOTCH4 BTNL2 RNF5 NFKBIL1 LY6G5B LTA SAPCD1 MIR6891 MCCD1 DDX39B PPT2 LY6G6D PRRC2A C4A C4B VARS MICA LOC100507547 SLC44A4 FKBPL HSPA1L ZBTB12 NCR3 EHMT2 SAPCD1-AS1 SKIV2L APOM HCG26 AGPAT1 C6orf25 HSPA1A ABHD16A MIR6721 BAG6 HLA-DRA ATP6V1G2-DDX39B CFB ATF6B LOC102725068 ATP6V1G2 GPANK1 MIR6832 NELFE LY6G6F AGER PBX2 TNXA PPT2-EGFL8 MICB MSH5 TNF SNORD52 MIR6833 C6orf10 PRRT1 MIR1236 HSPA1B SNORD84 EGFL8 MIR4646 NEU1 CYP21A2 DDAH2 CSNK2B LSM2 LY6G6C LY6G6E MSH5-SAPCD1 DDX39B-AS1 LST1 HLA-B AIF1 SNORD48 LOC101929163 HCG23 STK19 C2-AS1 DXO C6orf48 SNORA38

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