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See other RPUSD1 CNV Assays ›
Gene Symbol
RPUSD1
Assay Reference Genome
Location

Chr.16:786880 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01809148_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 113000

Gene Name:

 RNA pseudouridylate synthase domain containing 1

Gene Aliases:

 C16orf40, RLUCL

Location:

 Chr.16:784974-788383 on Build GRCh38

Assay Gene Location:

 Within Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RPUSD1 NM_001324086.1 5 602 NP_001311015.1
NM_001324410.1 5 503 NP_001311339.1
NM_001324411.1 4 490 NP_001311340.1
NM_001324412.1 4 404 NP_001311341.1
NM_001324413.1 5 494 NP_001311342.1
NM_001324414.1 5 550 NP_001311343.1
NM_001324415.1 5 603 NP_001311344.1
NM_058192.2 5 593 NP_478072.1
AL514840.3 5 453
AL520203.3 4 432
BC011783.2 4 458 AAH11783.1
BC012951.2 1 93 AAH12951.2
BG686882.1 5 592
BX358716.2 4 389
CN311777.1 5 507
CN311779.1 5 452
CX786721.1 5 553

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4828n54 Chr.16:760143 - 828324 on Build GRCh38 Gain MIR662 RPUSD1 GNG13 MSLN CHTF18 PRR25
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain MIR662 RPUSD1 GNG13 MSLN CHTF18 PRR25
nsv817712 Chr.16:774098 - 810673 on Build GRCh38 Loss RPUSD1 GNG13 CHTF18 PRR25
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MEIOB NME4 TPSAB1 TPSB2 FAM173A FBXL16 LUC7L TMEM8A LINC00254 PKD1 NPRL3 FAHD1 RHOT2 SNRNP25 TELO2 TRAF7 POLR3K NTN3 GNPTG PRSS27 CCDC154 RNPS1 NDUFB10 NHLRC4 MIR6511B1 UNKL HBZ TPSD1 MIR3178 DNASE1L2 GNG13 JMJD8 C1QTNF8 HAGH MIR6768 ERVK13-1 ABCA3 MIR3677 MAPK8IP3 RAB26 MRPL28 MIR6767 NOXO1 C16orf59 CAPN15 HBA2 MCRIP2 LOC105371045 IGFALS LMF1 HAGHL LOC105371046 LOC105371047 LMF1-AS1 NARFL RPUSD1 SNHG19 RPS2 RGS11 SPSB3 PRR25 HBM MIR1225 WDR90 SOX8 CEMP1 LOC105371038 AXIN1 RHBDF1 MIR4717 BAIAP3 SNORA78 LOC107984876 SYNGR3 HN1L PRSS29P LOC100287175 MIR3180-5 ARHGDIG TSC2 UBE2I LOC652276 MIR3176 SSTR5 LOC105371184 PRR35 LOC729652 FLJ42627 NUBP2 MIR940 CACNA1H SNORD60 ZNF598 MIR4516 WDR24 MSRB1 CASKIN1 NPW ABCA17P TPSG1 MIR5587 ATP6V0C RPL23AP5 MIR6859-4 EME2 MRPS34 STUB1 RPL3L CRAMP1 CLCN7 LOC107987233 MIR662 RAB40C HBA1 RNF151 TBC1D24 TBL3 FAM234A HS3ST6 PIGQ METTL26 GFER NTHL1 SSTR5-AS1 ECI1 METRN MPG PGP NME3 IFT140 PDIA2 MSLN CHTF18 WFIKKN1 MIR3177 PTX4 DDX11L10 RHBDL1 LOC100134368 LOC105371049 CCDC78 C16orf91 TSR3 DECR2 LINC00235 TMEM204 E4F1 HBQ1 PDPK1 LOC106660606 AMDHD2 KCTD5 RAB11FIP3 SNORA10 SNORA64 BRICD5 LOC101929280 WASIR2 CCNF SLC9A3R2 MLST8 SNHG9
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss NHLRC4 PIGQ METTL26 GNG13 JMJD8 LOC100287175 METRN FAM173A MIR3176 LOC105371184 PRR35 CAPN15 MSLN FBXL16 MCRIP2 CHTF18 WDR24 WFIKKN1 RHBDL1 HAGHL MIR5587 CCDC78 NARFL RHOT2 RPUSD1 LINC00235 STUB1 PRR25 LOC107987233 MIR662 RAB11FIP3 RAB40C LOC101929280 WDR90 LOC105371038
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss CCDC78 NARFL RHOT2 RPUSD1 GNG13 JMJD8 LOC100287175 STUB1 METRN FAM173A LOC105371184 MIR662 MSLN FBXL16 MCRIP2 CHTF18 WDR24 WDR90 LOC105371038 RHBDL1 HAGHL
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss NHLRC4 PIGQ METTL26 GNG13 JMJD8 LOC100287175 METRN FAM173A MIR3176 LOC105371184 PRR35 CAPN15 MSLN FBXL16 MCRIP2 CHTF18 WDR24 WFIKKN1 RHBDL1 HAGHL MIR5587 CCDC78 NARFL RHOT2 RPUSD1 LINC00235 STUB1 PRR25 LOC107987233 MIR662 RAB11FIP3 RAB40C LOC101929280 WDR90 LOC105371038
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion NHLRC4 PIGQ METTL26 LOC107984876 GNG13 JMJD8 C1QTNF8 SSTR5-AS1 LOC100287175 METRN FAM173A MIR3176 SSTR5 LOC105371184 PRR35 CAPN15 MSLN FBXL16 MCRIP2 CHTF18 WDR24 WFIKKN1 RHBDL1 LMF1 HAGHL MIR5587 CCDC78 LMF1-AS1 NARFL RHOT2 RPUSD1 LINC00235 STUB1 PRR25 LOC107987233 MIR662 RAB11FIP3 RAB40C LOC101929280 WDR90 SOX8 LOC105371038
nsv571042 Chr.16:785298 - 847566 on Build GRCh38 Loss RPUSD1 GNG13 CHTF18 PRR25
nsv457312 Chr.16:760039 - 797743 on Build GRCh38 Loss MIR662 RPUSD1 MSLN CHTF18
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication PIGQ METTL26 GNG13 JMJD8 LOC100287175 METRN FAM173A LOC105371184 MSLN FBXL16 MCRIP2 CHTF18 WDR24 WFIKKN1 RHBDL1 HAGHL CCDC78 NARFL RHOT2 RPUSD1 STUB1 MIR662 RAB40C LOC101929280 WDR90 LOC105371038
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication NHLRC4 PIGQ METTL26 GNG13 JMJD8 LOC100287175 METRN FAM173A MIR3176 LOC105371184 PRR35 CAPN15 MSLN FBXL16 MCRIP2 CHTF18 WDR24 WFIKKN1 RHBDL1 HAGHL MIR5587 CCDC78 NARFL RHOT2 RPUSD1 LINC00235 STUB1 PRR25 LOC107987233 MIR662 RAB11FIP3 RAB40C LOC101929280 WDR90 LOC105371038

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


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