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See other CPSF3L CNV Assays ›
Gene Symbol
CPSF3L
Assay Reference Genome
Location

Chr.1:1312032 on build GRCh38
Cytoband
1p36.33
Assay ID Hs01811232_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 54973

Gene Name:

 cleavage and polyadenylation specific factor 3-like

Gene Aliases:

 CPSF73L, INT11, INTS11, RC-68, RC68

Location:

 Chr.1:1311585-1324687 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 18 - Exon 18
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CPSF3L NM_001256456.1 NP_001243385.1
NM_001256460.1 NP_001243389.1
NM_001256462.1 NP_001243391.1
NM_001256463.1 NP_001243392.1
NM_017871.5 NP_060341.2
XM_011541647.1 XP_011539949.1
XM_011541648.1 XP_011539950.1
XM_011541650.1 XP_011539952.1
XM_017001557.1 XP_016857046.1
XM_017001558.1 XP_016857047.1
AA687684.1
AK000549.1 BAA91246.1
AK021939.1 BAB13943.1
AK023356.1 BAB14541.1
AK056652.1
AK058018.1
AK092190.1
AK123641.1
AK291387.1
AK297350.1
AL136813.1 CAB66747.1
BC000675.2 AAH00675.2
BC007978.2 AAH07978.1
BC008041.2 AAH08041.1
BC013904.2 AAH13904.2
BC020199.1 AAH20199.1
CR533557.1 CAG38588.1
KF274554.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss CFAP74 NADK LOC105378589 LOC100506504 MIR429 OR4F5 SLC35E2B LOC148413 PRKCZ AGRN LOC100288175 LOC100133331 LOC100288069 MIR6726 LOC105378592 B3GALT6 LINC00115 CPTP SLC35E2 LOC102724312 LOC105378948 ATAD3B CDK11A FAM87B MIR6808 GNB1 MIB2 PUSL1 MIR6727 MIR200A FAM132A MIR6859-2 MRPL20 MORN1 LOC105378591 PLEKHN1 SCNN1D LOC100134822 WASH7P MIR6723 SKI CDK11B NOC2L ISG15 LOC100129534 RNF223 TTLL10 MXRA8 FNDC10 MIR6859-1 DVL1 OR4F16 SSU72 UBE2J2 LOC101928626 LOC107984841 CALML6 VWA1 OR4F29 TMEM52 MMP23A CCNL2 LINC01342 MIR1302-2 ANKRD65 TNFRSF4 CPSF3L ATAD3A GABRD MTND1P23 SDF4 PERM1 FAAP20 TAS1R3 MIR200B LOC105378949 LOC100287934 LOC100132287 LOC100130417 LOC102725121 DDX11L1 LOC284600 LINC01128 TNFRSF18 TMEM88B MTND2P28 LOC729737 MMP23B TMEM240 ATAD3C FAM41C ACAP3 AURKAIP1 HES4 FAM138A SAMD11 C1orf159 LOC107985729 LOC105378947 TTLL10-AS1 LOC107985728 KLHL17
nsv544971 Chr.1:1294063 - 1351426 on Build GRCh38 Loss MIR6726 TAS1R3 PUSL1 CPTP CPSF3L MIR6727 ACAP3 DVL1 MIR6808
nsv544969 Chr.1:1290683 - 1374597 on Build GRCh38 Loss MIR6726 AURKAIP1 TAS1R3 SCNN1D PUSL1 MXRA8 CPTP CPSF3L MIR6727 ACAP3 DVL1 MIR6808
dgv7n100 Chr.1:1306835 - 1379057 on Build GRCh38 Loss AURKAIP1 TAS1R3 PUSL1 MXRA8 CPTP CPSF3L MIR6727 ACAP3 DVL1 MIR6808
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss PUSL1 MIR429 UBE2J2 MIR6727 MIR200A FAM132A LINC01342 SCNN1D TNFRSF4 CPSF3L ACAP3 SDF4 MIR6726 AURKAIP1 TAS1R3 B3GALT6 MIR200B CPTP C1orf159 RNF223 TTLL10 MXRA8 TTLL10-AS1 DVL1 MIR6808 TNFRSF18
dgv6n100 Chr.1:1301750 - 1362354 on Build GRCh38 Gain+Loss TAS1R3 PUSL1 MXRA8 CPTP CPSF3L MIR6727 ACAP3 DVL1 MIR6808
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication PUSL1 MIR429 UBE2J2 MIR6727 MIR200A FAM132A LINC01342 SCNN1D TNFRSF4 CPSF3L AGRN LOC100288175 ACAP3 SDF4 MIR6726 TAS1R3 B3GALT6 MIR200B CPTP C1orf159 RNF223 LOC105378948 TTLL10 TTLL10-AS1 TNFRSF18
nsv1160788 Chr.1:1282706 - 1376336 on Build GRCh38 Deletion MIR6726 AURKAIP1 TAS1R3 SCNN1D PUSL1 MXRA8 CPTP CPSF3L MIR6727 ACAP3 DVL1 MIR6808
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss NADK MIR429 SSU72 UBE2J2 VWA1 MMP23A CCNL2 LINC01342 ANKRD65 SLC35E2B LOC148413 TNFRSF4 CPSF3L ATAD3A AGRN LOC100288175 LOC100288069 SDF4 MIR6726 PERM1 TAS1R3 B3GALT6 LINC00115 MIR200B LOC100287934 CPTP SLC35E2 LOC102724312 LOC100130417 LOC105378948 LOC284600 LINC01128 ATAD3B CDK11A FAM87B MIR6808 TNFRSF18 MIB2 TMEM88B PUSL1 MIR6727 MIR200A FAM132A MMP23B MRPL20 TMEM240 PLEKHN1 ATAD3C SCNN1D FAM41C ACAP3 AURKAIP1 CDK11B HES4 SAMD11 NOC2L ISG15 C1orf159 RNF223 LOC107985729 TTLL10 MXRA8 FNDC10 TTLL10-AS1 LOC107985728 KLHL17 DVL1
esv3890636 Chr.1:1304555 - 1353203 on Build GRCh38 Loss TAS1R3 PUSL1 MXRA8 CPTP CPSF3L MIR6727 ACAP3 DVL1 MIR6808
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion TMEM88B PUSL1 MIR429 SSU72 UBE2J2 MIR6727 MIR200A VWA1 FAM132A MMP23B MRPL20 TMEM240 CCNL2 LINC01342 ANKRD65 LOC148413 ATAD3C SCNN1D TNFRSF4 CPSF3L ATAD3A ACAP3 SDF4 MIR6726 AURKAIP1 TAS1R3 B3GALT6 CDK11B MIR200B CPTP LOC102724312 C1orf159 LOC107985729 TTLL10 MXRA8 FNDC10 ATAD3B TTLL10-AS1 DVL1 MIR6808 TNFRSF18 MIB2
nsv1000169 Chr.1:1281678 - 1362354 on Build GRCh38 Gain MIR6726 TAS1R3 SCNN1D PUSL1 MXRA8 CPTP CPSF3L MIR6727 ACAP3 DVL1 MIR6808
esv2758912 Chr.1:1263940 - 1384492 on Build GRCh38 Loss MIR6726 AURKAIP1 TAS1R3 PUSL1 CPTP UBE2J2 MIR6727 SCNN1D MXRA8 CPSF3L ACAP3 DVL1 MIR6808
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain TMEM88B PUSL1 MIR429 UBE2J2 MIR6727 MIR200A FAM132A MRPL20 CCNL2 LINC01342 PLEKHN1 ANKRD65 LOC148413 SCNN1D TNFRSF4 CPSF3L AGRN LOC100288175 ACAP3 SDF4 MIR6726 AURKAIP1 PERM1 TAS1R3 B3GALT6 MIR200B HES4 CPTP SAMD11 NOC2L ISG15 LOC100130417 C1orf159 RNF223 LOC105378948 LOC284600 TTLL10 MXRA8 TTLL10-AS1 LOC107985728 KLHL17 DVL1 MIR6808 TNFRSF18
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain SDF4 MIR6726 B3GALT6 MIR200B PUSL1 MIR429 UBE2J2 MIR6727 MIR200A FAM132A SCNN1D TTLL10 TNFRSF4 CPSF3L TTLL10-AS1 ACAP3 TNFRSF18

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


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