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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89738962 on build GRCh38
Cytoband
16q24.3
Assay ID Hs01824716_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 43 - Exon 44
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
AK299282.1
X99226.1 CAA67610.1

Target Gene Details

Entrez Gene ID:

 92822

Gene Name:

 zinc finger protein 276

Gene Aliases:

 CENP-Z, CENPZ, ZADT, ZFP276, ZNF477

Location:

 Chr.16:89720368-89740925 on Build GRCh38

Assay Gene Location:

 Within Exon 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ZNF276 NM_001113525.1 11 2658 NP_001106997.1
NM_152287.3 11 2648 NP_689500.2
NR_110122.1 11 2733
NR_110126.1 11 2616
NR_110128.1 11 2539
NR_110129.1 11 2628
XM_017023890.1 10 2583 XP_016879379.1
AK056405.1 11 2684
AK096004.1 1 420
BC107603.1 11 2473 AAI07604.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1931 Chr.16:89713649 - 89746701 on Build GRCh38 Insertion VPS9D1-AS1 VPS9D1 FANCA ZNF276
nsv457624 Chr.16:89738447 - 89915950 on Build GRCh38 Loss LOC105371419 SPIRE2 FANCA ZNF276 TCF25 LOC107984817
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion VPS9D1-AS1 VPS9D1 SPATA2L CDK10 FANCA ZNF276
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss CHMP1A AFG3L1P VPS9D1 CDK10 DPEP1 FANCA ZNF276 TUBB3 LOC105371419 VPS9D1-AS1 SPIRE2 SPATA2L GAS8-AS1 MC1R DEF8 DBNDD1 CENPBD1 GAS8 TCF25 SPATA33 LOC107984817
nsv457623 Chr.16:89664419 - 89853617 on Build GRCh38 Gain LOC105371419 VPS9D1-AS1 VPS9D1 SPIRE2 SPATA2L CDK10 FANCA ZNF276 SPATA33 LOC107984817
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss PRDM7 VPS9D1 LOC100287036 CPNE7 FANCA ZNF276 URAHP LOC105371414 VPS9D1-AS1 RPL13 ANKRD11 GAS8-AS1 FAM157C DEF8 DBNDD1 CENPBD1 SPG7 SPATA33 LOC107984817 CHMP1A AFG3L1P CDK10 TUBB8P7 DPEP1 TUBB3 LOC105371419 SPIRE2 SPATA2L LOC101927817 MC1R GAS8 TCF25 ZNF778 SNORD68
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss LOC105371419 SPIRE2 FANCA ZNF276 LOC107984817
nsv833330 Chr.16:89678466 - 89741783 on Build GRCh38 Loss VPS9D1-AS1 VPS9D1 SPATA2L CDK10 FANCA ZNF276
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss LOC100289580 APRT VPS9D1 LOC400558 LOC105371414 IL17C VPS9D1-AS1 MVD RPL13 ANKRD11 GAS8-AS1 FAM157C DEF8 LOC107984817 LOC100129697 CHMP1A AFG3L1P TUBB8P7 PIEZO1 LOC101927793 LOC105371419 MIR4722 SPIRE2 SPATA2L ACSF3 LOC101927817 CYBA LINC00304 SNAI3-AS1 RNF166 PRDM7 GALNS PABPN1L LOC100287036 CPNE7 FANCA ZNF276 CBFA2T3 CDT1 URAHP LOC339059 LOC107987238 TRAPPC2L DBNDD1 CENPBD1 SPG7 SLC22A31 SPATA33 LOC105371409 SNAI3 CDK10 DPEP1 TUBB3 CTU2 MC1R GAS8 TCF25 ZNF778 SNORD68 CDH15
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion CHMP1A VPS9D1 CDK10 CPNE7 DPEP1 FANCA ZNF276 VPS9D1-AS1 RPL13 SPATA2L SPG7 SNORD68 SPATA33

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