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See other TRPM4 CNV Assays ›
Gene Symbol
TRPM4
Assay Reference Genome
Location

Chr.19:49168310 on build GRCh38
Cytoband
19q13.33
Assay ID Hs01830330_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 54795

Gene Name:

 transient receptor potential cation channel subfamily M member 4

Gene Aliases:

 LTrpC4, PFHB1B, TRPM4B, hTRPM4

Location:

 Chr.19:49157741-49211841 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRPM4 NM_001195227.1 NP_001182156.1
NM_001321281.1 NP_001308210.1
NM_001321282.1 NP_001308211.1
NM_001321283.1 NP_001308212.1
NM_001321285.1 NP_001308214.1
NM_017636.3 NP_060106.2
AF497623.1 AAM18083.1
AJ575813.1 CAE05941.1
AK000048.1 BAA90907.1
AK292862.1
AK295820.1
AK307897.1
AY046396.1 AAL02142.1
AY297044.1 AAP44473.1
AY297045.1 AAP44474.1
AY297046.1 AAP44475.1
BC132727.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv833859 Chr.19:48997009 - 49173266 on Build GRCh38 Loss PPFIA3 SNAR-G2 C19orf73 LHB NTF4 CGB8 SNRNP70 LOC101059948 CGB2 CGB7 HRC TRPM4 KCNA7 MIR6798 CGB1 RUVBL2 SNAR-G1 CGB5 CGB3 LIN7B
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss CCDC155 SNAR-G2 SNAR-A6 NTF4 SNAR-A13 GRWD1 FUT2 PLA2G4C-AS1 LOC100287477 NUP62 IRF3 GYS1 SULT2B1 CYTH2 SIGLEC11 AP2A1 ALDH16A1 PIH1D1 TMEM143 TBC1D17 CGB3 ZNF473 C19orf73 LIG1 LHB KCNJ14 LOC101928295 CGB8 MIR6800 HSD17B14 FUZ TULP2 TSKS CA11 BCAT2 PRMT1 SLC6A16 SNORD32A EMP3 LMTK3 BSPH1 CGB2 HRC NUCB1-AS1 SNAR-A5 CABP5 KDELR1 SNORD35A CARD8-AS1 SNAR-A11 SNAR-B1 ATF5 SNAR-A10 DBP LIN7B SNAR-A2 CARD8 ELSPBP1 LOC105447645 SNAR-A14 PTH2 AKT1S1 IZUMO1 SNAR-D FUT1 PRR12 PLA2G4C PPP1R15A RPL13A SCAF1 VRK3 SIGLEC16 PPFIA3 PLEKHA4 CD37 SYNGR4 LOC101059948 FAM83E RPS11 BCL2L12 NTN5 MIR4751 SNAR-A4 KCNA7 SNAR-B2 SEC1P FLJ26850 SPHK2 DHDH RUVBL2 IL4I1 SNORD34 SNAR-A8 ADM5 SNORD33 MIR6799 PTOV1 TRPM4 FCGRT MIR4750 RCN3 RRAS SNORD35B DKKL1 CGB5 SPACA4 LOC105372430 GFY SLC17A7 SNRNP70 PTOV1-AS1 SNAR-C4 PNKP C19orf68 ZNF114 MIR4749 SNAR-A1 MED25 SNAR-A3 NOSIP CCDC114 SNAR-A9 SNAR-G1 BAX CPT1C SNAR-C5 MIR150 GRIN2D FTL MIR5088 PRRG2 SNAR-A7 CGB7 SNAR-C3 MIR4324 TEAD2 RASIP1 SNAR-C1 MIR6798 SNAR-C2 SNAR-A12 PTOV1-AS2 CGB1 RPL18 FGF21 MAMSTR FLT3LG NUCB1
dgv1057e212 Chr.19:49165806 - 49183334 on Build GRCh38 Loss TRPM4
nsv1060108 Chr.19:49118098 - 49183334 on Build GRCh38 Gain PPFIA3 C19orf73 HRC TRPM4 LIN7B
esv2760526 Chr.19:49115521 - 49170761 on Build GRCh38 Gain PPFIA3 C19orf73 HRC TRPM4 LIN7B
dgv667e214 Chr.19:49130606 - 49174364 on Build GRCh38 Gain PPFIA3 HRC TRPM4

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More Information


Additional Information:

For this assay, SNP(s) [rs78444754] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

ion channel transporter

Gene Ontology Categories:

Function(s) Process(es)


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