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See other TRPM4 CNV Assays ›
Gene Symbol
TRPM4
Assay Reference Genome
Location

Chr.19:49168310 on build GRCh38
Cytoband
19q13.33
Assay ID Hs01830330_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 54795

Gene Name:

 transient receptor potential cation channel subfamily M member 4

Gene Aliases:

 LTrpC4, PFHB1B, TRPM4B, hTRPM4

Location:

 Chr.19:49157741-49211841 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRPM4 NM_001195227.1 NP_001182156.1
NM_001321281.1 NP_001308210.1
NM_001321282.1 NP_001308211.1
NM_001321283.1 NP_001308212.1
NM_001321285.1 NP_001308214.1
NM_017636.3 NP_060106.2
AF497623.1 AAM18083.1
AJ575813.1 CAE05941.1
AK000048.1 BAA90907.1
AK292862.1
AK295820.1
AK307897.1
AY046396.1 AAL02142.1
AY297044.1 AAP44473.1
AY297045.1 AAP44474.1
AY297046.1 AAP44475.1
BC132727.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv833859 Chr.19:48997009 - 49173266 on Build GRCh38 Loss CGB7 LOC101059948 HRC KCNA7 SNAR-G1 CGB3 C19orf73 LIN7B SNRNP70 CGB2 NTF4 PPFIA3 MIR6798 CGB5 CGB1 RUVBL2 TRPM4 SNAR-G2 CGB8 LHB
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss SLC6A16 LOC101059948 FCGRT RRAS RPL13A CGB2 PTH2 SNAR-C3 FUZ SNAR-C5 PLA2G4C-AS1 RPS11 IZUMO1 CGB1 MIR4750 SPACA4 GYS1 SNAR-A11 LOC101928295 AP2A1 KCNA7 CGB3 SNAR-A9 NUCB1 SNAR-A4 FGF21 NUCB1-AS1 DBP IRF3 IL4I1 ATF5 NTN5 RUVBL2 TRPM4 SNAR-A7 SNAR-B2 NOSIP MIR150 FLT3LG SNAR-A2 SNORD32A NUP62 SNAR-G1 GFY MIR6800 MIR6798 SNAR-A5 FTL FLJ26850 LOC100287477 KDELR1 SNAR-D PRRG2 SNAR-A6 SNORD35B HRC KCNJ14 SNRNP70 MIR4751 BCAT2 SNAR-A10 CABP5 MAMSTR PRMT1 SLC17A7 TBC1D17 MIR6799 MIR5088 PTOV1-AS1 PNKP SPHK2 CGB7 LIG1 ALDH16A1 RCN3 LOC105372430 C19orf73 LIN7B NTF4 PPFIA3 CPT1C SNAR-A14 LOC105447645 CGB5 FAM83E AKT1S1 TMEM143 FUT2 TULP2 CGB8 SIGLEC11 MIR4324 LHB BAX SCAF1 RPL18 PPP1R15A PLA2G4C DKKL1 SIGLEC16 FUT1 VRK3 SNAR-B1 TEAD2 ADM5 GRIN2D PTOV1-AS2 HSD17B14 SNAR-G2 SYNGR4 CCDC155 SNORD34 SNAR-A12 SNAR-C4 EMP3 MIR4749 SNORD35A CD37 GRWD1 SNAR-A8 SNAR-C2 BCL2L12 MED25 ELSPBP1 SNAR-A1 BSPH1 CYTH2 TSKS SNORD33 LMTK3 C19orf68 ZNF473 PRR12 CCDC114 SEC1P CA11 DHDH SNAR-A3 ZNF114 SULT2B1 CARD8-AS1 RASIP1 CARD8 PTOV1 SNAR-A13 SNAR-C1 PLEKHA4 PIH1D1
nsv1060108 Chr.19:49118098 - 49183334 on Build GRCh38 Gain HRC TRPM4 C19orf73 LIN7B PPFIA3
dgv1057e212 Chr.19:49165806 - 49183334 on Build GRCh38 Loss TRPM4
esv2760526 Chr.19:49115521 - 49170761 on Build GRCh38 Gain HRC TRPM4 C19orf73 LIN7B PPFIA3
dgv667e214 Chr.19:49130606 - 49174364 on Build GRCh38 Gain HRC TRPM4 PPFIA3

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More Information


Additional Information:

For this assay, SNP(s) [rs78444754] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

ion channel transporter

Gene Ontology Categories:

Function(s) Process(es)


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