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See other SPSB3 CNV Assays ›
Gene Symbol
SPSB3
Assay Reference Genome
Location

Chr.16:1777998 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01839506_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 90864

Gene Name:

 splA/ryanodine receptor domain and SOCS box containing 3

Gene Aliases:

 C16orf31, SSB3

Location:

 Chr.16:1776712-1782605 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 5 - Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SPSB3 NM_001324081.1 NP_001311010.1
NM_080861.3 NP_543137.2
XM_005255673.4 XP_005255730.1
AF403028.1 AAL57347.1
AK074190.1
AK302041.1
BC007588.1
BC024244.1 AAH24244.1
BC041897.1 AAH41897.1
BC047441.1
BI768095.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv457335 Chr.16:1729694 - 1789022 on Build GRCh38 Loss NME3 MAPK8IP3 EME2 NUBP2 MIR3177 MRPS34 SPSB3
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MIR6859-4 MRPL28 SNORD60 LOC107984876 RNF151 NUBP2 ECI1 METTL26 LOC100287175 MRPS34 MIR3178 BRICD5 SSTR5-AS1 LOC105371184 RGS11 PIGQ CCNF RPUSD1 LOC105371046 RAB40C SLC9A3R2 TPSG1 RPL3L MEIOB PGP PRR35 CRAMP1 ABCA17P WASIR2 METRN LOC729652 PRSS27 PRR25 C1QTNF8 AXIN1 ATP6V0C FBXL16 RPL23AP5 MIR4516 WDR90 CLCN7 RHBDF1 PRSS29P HBA1 TMEM8A TMEM204 FAM173A MIR940 TSR3 NOXO1 HBQ1 LINC00235 CCDC78 RAB26 LOC106660606 UBE2I TBC1D24 MSLN MSRB1 CCDC154 NTN3 LUC7L NME3 HN1L LINC00254 LOC105371047 ZNF598 NHLRC4 LOC652276 MIR3180-5 NPW MIR3177 LMF1-AS1 POLR3K NARFL NDUFB10 SYNGR3 TSC2 C16orf59 SNRNP25 SNHG19 NME4 BAIAP3 ERVK13-1 HS3ST6 LOC105371049 LOC105371045 GFER KCTD5 TPSB2 LOC107987233 MAPK8IP3 SNORA10 E4F1 CASKIN1 FLJ42627 RHOT2 NTHL1 MIR6511B1 DNASE1L2 MPG LOC105371038 TRAF7 CAPN15 MLST8 CACNA1H MIR3176 FAHD1 MIR1225 LMF1 SNHG9 ABCA3 PTX4 HAGH UNKL WDR24 MIR6768 MIR662 EME2 IGFALS LOC100134368 HBM LOC101929280 RHBDL1 PDPK1 HBA2 SNORA64 HAGHL MIR4717 RPS2 SSTR5 DDX11L10 TBL3 AMDHD2 FAM234A TPSD1 MIR3677 DECR2 RNPS1 CHTF18 SNORA78 PDIA2 C16orf91 CEMP1 TELO2 JMJD8 MCRIP2 NPRL3 STUB1 SOX8 TPSAB1 MIR5587 IFT140 GNPTG GNG13 MIR6767 HBZ PKD1 SPSB3 ARHGDIG WFIKKN1 RAB11FIP3
esv3892756 Chr.16:1764390 - 1780436 on Build GRCh38 Loss NME3 MAPK8IP3 EME2 MRPS34 SPSB3
nsv1160328 Chr.16:1704619 - 1797867 on Build GRCh38 Deletion NME3 MAPK8IP3 EME2 IGFALS NUBP2 MIR3177 MRPS34 SPSB3
nsv571171 Chr.16:1757779 - 1804539 on Build GRCh38 Gain+Loss NME3 MAPK8IP3 EME2 IGFALS NUBP2 MRPS34 SPSB3
dgv4856n54 Chr.16:1600945 - 1813519 on Build GRCh38 Loss NME3 HN1L EME2 IGFALS CRAMP1 NUBP2 MIR3177 IFT140 MRPS34 HAGH MAPK8IP3 LOC105371046 SPSB3
nsv471069 Chr.16:1754356 - 1791032 on Build GRCh38 Loss NME3 MAPK8IP3 EME2 IGFALS NUBP2 MRPS34 SPSB3
nsv1051692 Chr.16:1505070 - 1866102 on Build GRCh38 Loss NME3 TELO2 HN1L EME2 IGFALS CRAMP1 LOC105371047 TMEM204 NUBP2 FAHD1 MIR3177 IFT140 MRPS34 HAGH MAPK8IP3 LOC105371046 SPSB3 MEIOB
nsv827500 Chr.16:1761258 - 1795126 on Build GRCh38 Gain NME3 MAPK8IP3 EME2 IGFALS NUBP2 MRPS34 SPSB3
nsv518641 Chr.16:1645775 - 1835631 on Build GRCh38 Loss NME3 HN1L EME2 IGFALS CRAMP1 NUBP2 FAHD1 MIR3177 MRPS34 HAGH MAPK8IP3 SPSB3 MEIOB
nsv571173 Chr.16:1767596 - 1780436 on Build GRCh38 Loss NME3 MAPK8IP3 EME2 MRPS34 SPSB3
nsv952900 Chr.16:1724500 - 1827999 on Build GRCh38 Deletion HAGH NME3 MAPK8IP3 EME2 IGFALS NUBP2 FAHD1 MIR3177 MRPS34 SPSB3
nsv571170 Chr.16:1752231 - 1791032 on Build GRCh38 Loss NME3 MAPK8IP3 EME2 IGFALS NUBP2 MRPS34 SPSB3

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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