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See other PHF1 CNV Assays ›
Gene Symbol
PHF1
Assay Reference Genome
Location

Chr.6:33412437 on build GRCh38
Cytoband
6p21.32
Assay ID Hs01850685_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 5252

Gene Name:

 PHD finger protein 1

Gene Aliases:

 MTF2L2, PCL1, PHF2, TDRD19C, hPHF1

Location:

 Chr.6:33410751-33416453 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 3 - Intron 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PHF1 NM_002636.4 NP_002627.1
NM_024165.2 NP_077084.1
NR_027692.1
XM_011514662.1 XP_011512964.1
XM_011514663.1 XP_011512965.1
XM_011514664.1 XP_011512966.1
XM_011514665.1 XP_011512967.1
XM_011514666.1 XP_011512968.1
XM_011514669.1 XP_011512971.1
XM_011514670.2 XP_011512972.1
XM_017010939.1 XP_016866428.1
AF029678.1 AAC52062.1
AF052205.1 AAC13273.1
AK225913.1
AK295412.1
AK316499.1
BC008834.2 AAH08834.1
DA065298.1
DA872118.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830637 Chr.6:33361588 - 33542927 on Build GRCh38 Loss ZBTB9 SYNGAP1 PHF1 MIR5004 KIFC1 CUTA
nsv830635 Chr.6:33270228 - 33446010 on Build GRCh38 Loss DAXX VPS52 B3GALT4 MIR5004 MIR6834 WDR46 ZBTB22 SYNGAP1 PHF1 RGL2 RPS18 PFDN6 MIR6873 KIFC1 TAPBP CUTA
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion HLA-DMA DAXX B3GALT4 LY6G6F STK19 SAPCD1-AS1 C6orf25 HCG24 CLIC1 SNORD84 LOC100294145 HLA-DPA1 DXO PFDN6 TAPBP EHMT2 CYP21A2 C6orf47 BTNL2 HSPA1L VWA7 HCG26 HLA-DQA2 HLA-DQB1 HLA-DRB6 HLA-DQB2 BRD2 AGER LSM2 RGL2 BAG6 HLA-DPB1 PRRC2A MIR6873 SNORA38 SNORD48 C4B PRRT1 NELFE LTA GPSM3 LST1 C6orf10 SKIV2L VARS DDX39B SAPCD1 ZBTB9 LOC100507547 VPS52 LY6G5B LOC101929163 GPANK1 MIR3135B MIR5004 HLA-DMB NOTCH4 ATP6V1G2-DDX39B DDAH2 LY6G5C APOM FKBPL HCG25 TNXA HSPA1B TAP1 NCR3 SNORD117 PPP1R2P1 HLA-DQA1 LY6G6C SNORD52 PSMB9 MIR219A1 PPT2 MSH5 ABHD16A WDR46 HLA-DPB2 LY6G6D HLA-DRB1 C2 PHF1 RNF5 TNXB C6orf48 SLC39A7 MIR6832 HSD17B8 C2-AS1 AIF1 HLA-DOA ATF6B PBX2 MIR6721 COL11A2 CSNK2B RING1 HLA-DRA ATP6V1G2 ZBTB22 PPT2-EGFL8 CFB EGFL8 MIR6833 TAP2 DDX39B-AS1 KIFC1 NFKBIL1 TNF MIR6834 MIR4646 HCG23 HCP5 SYNGAP1 NEU1 RPS18 MCCD1 LY6G6E PSMB8 LOC102725068 AGPAT1 HSPA1A SLC44A4 RXRB LOC100287329 MSH5-SAPCD1 HLA-DQB1-AS1 MIR1236 MICB HLA-DOB ZBTB12 C4A CYP21A1P HLA-DRB5 LTB CUTA PSMB8-AS1
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion HLA-DMA DAXX B3GALT4 LY6G6F STK19 SAPCD1-AS1 C6orf25 HCG24 CLIC1 SNORD84 LOC100294145 HLA-DPA1 DXO PFDN6 TAPBP EHMT2 CYP21A2 C6orf47 BTNL2 HSPA1L VWA7 HCG26 HLA-DQA2 HLA-DQB1 HLA-DRB6 HLA-DQB2 BRD2 AGER LSM2 RGL2 BAG6 HLA-DPB1 PRRC2A MIR6873 SNORA38 SNORD48 C4B PRRT1 NELFE LTA GPSM3 LST1 C6orf10 SKIV2L VARS DDX39B SAPCD1 ZBTB9 LOC100507547 VPS52 LY6G5B LOC101929163 GPANK1 MIR3135B MIR5004 HLA-DMB NOTCH4 ATP6V1G2-DDX39B DDAH2 LY6G5C APOM FKBPL HCG25 TNXA HSPA1B TAP1 NCR3 SNORD117 PPP1R2P1 HLA-DQA1 LY6G6C SNORD52 PSMB9 MIR219A1 PPT2 MSH5 ABHD16A WDR46 HLA-DPB2 LY6G6D HLA-DRB1 C2 PHF1 RNF5 TNXB C6orf48 SLC39A7 MIR6832 HSD17B8 C2-AS1 AIF1 HLA-DOA ATF6B PBX2 MIR6721 COL11A2 CSNK2B RING1 HLA-DRA ATP6V1G2 ZBTB22 PPT2-EGFL8 CFB EGFL8 MIR6833 TAP2 DDX39B-AS1 KIFC1 NFKBIL1 TNF MIR6834 MIR4646 HCG23 HCP5 SYNGAP1 NEU1 RPS18 MCCD1 LY6G6E PSMB8 LOC102725068 AGPAT1 HSPA1A SLC44A4 RXRB LOC100287329 MSH5-SAPCD1 HLA-DQB1-AS1 MIR1236 MICB HLA-DOB ZBTB12 C4A CYP21A1P HLA-DRB5 LTB CUTA PSMB8-AS1
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion HLA-DMA DAXX PSMB9 B3GALT4 MIR219A1 MIR6834 WDR46 HLA-DPB2 HCG24 SYNGAP1 PHF1 LOC100294145 HLA-DPA1 RPS18 PFDN6 SLC39A7 TAPBP HSD17B8 HLA-DOA ZBTB9 PSMB8 VPS52 HLA-DQA2 HLA-DQB1 MIR3135B MIR5004 HLA-DMB RXRB COL11A2 HLA-DQB2 RING1 BRD2 HLA-DQB1-AS1 ZBTB22 HCG25 HLA-DOB RGL2 TAP1 HLA-DPB1 TAP2 MIR6873 KIFC1 CUTA PPP1R2P1 PSMB8-AS1 HLA-DQA1

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