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See other PHF1 CNV Assays ›
Gene Symbol
PHF1
Assay Reference Genome
Location

Chr.6:33412437 on build GRCh38
Cytoband
6p21.32
Assay ID Hs01850685_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 5252

Gene Name:

 PHD finger protein 1

Gene Aliases:

 MTF2L2, PCL1, PHF2, TDRD19C, hPHF1

Location:

 Chr.6:33410751-33416453 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 3 - Intron 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PHF1 NM_002636.4 NP_002627.1
NM_024165.2 NP_077084.1
NR_027692.1
XM_011514662.1 XP_011512964.1
XM_011514663.1 XP_011512965.1
XM_011514664.1 XP_011512966.1
XM_011514665.1 XP_011512967.1
XM_011514666.1 XP_011512968.1
XM_011514669.1 XP_011512971.1
XM_011514670.2 XP_011512972.1
XM_017010939.1 XP_016866428.1
AF029678.1 AAC52062.1
AF052205.1 AAC13273.1
AK225913.1
AK295412.1
AK316499.1
BC008834.2 AAH08834.1
DA065298.1
DA872118.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830637 Chr.6:33361588 - 33542927 on Build GRCh38 Loss CUTA MIR5004 PHF1 ZBTB9 SYNGAP1 KIFC1
nsv830635 Chr.6:33270228 - 33446010 on Build GRCh38 Loss CUTA B3GALT4 WDR46 SYNGAP1 ZBTB22 TAPBP MIR6873 MIR6834 KIFC1 VPS52 RPS18 RGL2 MIR5004 PHF1 PFDN6 DAXX
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion C2 HLA-DRB5 HCG24 PSMB8 AGPAT1 LY6G6D HLA-DPB2 HLA-DOB SNORD84 SAPCD1-AS1 ATF6B CUTA C6orf47 SYNGAP1 HLA-DQA2 LOC100287329 ATP6V1G2-DDX39B HLA-DQB1-AS1 BAG6 LY6G6F C6orf10 LY6G5C PSMB9 LY6G5B TAP1 TNXA HSPA1B PRRT1 EHMT2 CFB HCG25 HLA-DQB1 NCR3 ZBTB9 HLA-DRB6 GPANK1 MIR6873 SNORD117 HLA-DRB1 RNF5 PFDN6 LOC101929163 C4A TNXB LSM2 DAXX PPT2 CSNK2B ZBTB12 HLA-DPB1 MIR219A1 STK19 MIR1236 ABHD16A DDAH2 DDX39B-AS1 PHF1 PPT2-EGFL8 RING1 MICB LTB CLIC1 LOC100507547 C6orf25 HLA-DRA DXO LY6G6E TAP2 HLA-DQB2 HSD17B8 RXRB NELFE SAPCD1 HSPA1A RPS18 PBX2 MIR6833 HLA-DPA1 HCP5 EGFL8 NFKBIL1 WDR46 AIF1 PRRC2A MIR6834 CYP21A2 C6orf48 MIR6832 SNORD48 MIR4646 HLA-DMB APOM MIR3135B MCCD1 BTNL2 LOC100294145 TNF AGER MSH5 SNORA38 SLC44A4 HLA-DOA LOC102725068 SKIV2L FKBPL HSPA1L VARS C4B MIR6721 LY6G6C B3GALT4 HLA-DQA1 BRD2 DDX39B CYP21A1P COL11A2 C2-AS1 PPP1R2P1 LTA VWA7 ZBTB22 TAPBP SLC39A7 KIFC1 HCG23 SNORD52 VPS52 MSH5-SAPCD1 NEU1 LST1 RGL2 MIR5004 PSMB8-AS1 HLA-DMA HCG26 ATP6V1G2 GPSM3 NOTCH4
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion C2 HLA-DRB5 HCG24 PSMB8 AGPAT1 LY6G6D HLA-DPB2 HLA-DOB SNORD84 SAPCD1-AS1 ATF6B CUTA C6orf47 SYNGAP1 HLA-DQA2 LOC100287329 ATP6V1G2-DDX39B HLA-DQB1-AS1 BAG6 LY6G6F C6orf10 LY6G5C PSMB9 LY6G5B TAP1 TNXA HSPA1B PRRT1 EHMT2 CFB HCG25 HLA-DQB1 NCR3 ZBTB9 HLA-DRB6 GPANK1 MIR6873 SNORD117 HLA-DRB1 RNF5 PFDN6 LOC101929163 C4A TNXB LSM2 DAXX PPT2 CSNK2B ZBTB12 HLA-DPB1 MIR219A1 STK19 MIR1236 ABHD16A DDAH2 DDX39B-AS1 PHF1 PPT2-EGFL8 RING1 MICB LTB CLIC1 LOC100507547 C6orf25 HLA-DRA DXO LY6G6E TAP2 HLA-DQB2 HSD17B8 RXRB NELFE SAPCD1 HSPA1A RPS18 PBX2 MIR6833 HLA-DPA1 HCP5 EGFL8 NFKBIL1 WDR46 AIF1 PRRC2A MIR6834 CYP21A2 C6orf48 MIR6832 SNORD48 MIR4646 HLA-DMB APOM MIR3135B MCCD1 BTNL2 LOC100294145 TNF AGER MSH5 SNORA38 SLC44A4 HLA-DOA LOC102725068 SKIV2L FKBPL HSPA1L VARS C4B MIR6721 LY6G6C B3GALT4 HLA-DQA1 BRD2 DDX39B CYP21A1P COL11A2 C2-AS1 PPP1R2P1 LTA VWA7 ZBTB22 TAPBP SLC39A7 KIFC1 HCG23 SNORD52 VPS52 MSH5-SAPCD1 NEU1 LST1 RGL2 MIR5004 PSMB8-AS1 HLA-DMA HCG26 ATP6V1G2 GPSM3 NOTCH4
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion HCG25 HLA-DQB2 HLA-DQB1 HLA-DOA ZBTB9 HSD17B8 RXRB HCG24 PSMB8 MIR6873 HLA-DPB2 RPS18 HLA-DOB PFDN6 HLA-DPA1 DAXX CUTA B3GALT4 HLA-DQA1 BRD2 WDR46 HLA-DPB1 MIR219A1 COL11A2 PPP1R2P1 SYNGAP1 HLA-DQA2 ZBTB22 TAPBP SLC39A7 MIR6834 KIFC1 VPS52 HLA-DQB1-AS1 RGL2 HLA-DMB MIR5004 MIR3135B PHF1 PSMB8-AS1 HLA-DMA RING1 PSMB9 LOC100294145 TAP1 TAP2

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