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See other DXO CNV Assays ›
Gene Symbol
DXO
Assay Reference Genome
Location

Chr.6:31971927 on build GRCh38
Cytoband
6p21.33
Assay ID Hs01856269_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 1797

Gene Name:

 decapping exoribonuclease

Gene Aliases:

 DOM3L, DOM3Z, NG6, RAI1

Location:

 Chr.6:31969811-31972290 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 1 - Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
DXO NM_005510.3 NP_005501.2
XM_006715005.3 XP_006715068.1
XM_017010329.1 XP_016865818.1
AF059252.1 AAC78603.1
AF059253.1 AAC78604.1
AF059254.1 AAC78605.1
AK310107.1
BC009344.2 AAH09344.1
BC019083.2 AAH19083.1

Target Gene Details

Entrez Gene ID:

 8859

Gene Name:

 serine/threonine kinase 19

Gene Aliases:

 D6S60, D6S60E, G11, HLA-RP1, RP1

Location:

 Chr.6:31971175-31981446 on Build GRCh38

Assay Gene Location:

 Within Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
STK19 NM_004197.1 1 59 NP_004188.1
NM_032454.1 1 59 NP_115830.1
NR_026717.1 2 159
AK302111.1 2 173
AK303438.1 1 97
BC110347.1 2 159 AAI10348.1
BC121128.1
BC121129.1
BC143833.1
L26260.1 1 59 AAA20122.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv601970 Chr.6:31970674 - 31980252 on Build GRCh38 Loss STK19 DXO
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss MIR6721 C6orf48 SNORD52 STK19 HLA-DRB5 GPSM3 C4A SKIV2L CYP21A2 HSPA1A C6orf10 BTNL2 HLA-DRB1 HLA-DQB1 ZBTB12 SNORD48 HLA-DRA TNXB SLC44A4 PBX2 NELFE ATF6B HCG23 DXO HLA-DRB6 RNF5 TNXA MIR6833 HSPA1B PRRT1 HLA-DQA1 NEU1 PPT2 C4B C2-AS1 AGPAT1 C2 MIR1236 CFB CYP21A1P AGER EGFL8 EHMT2 FKBPL LOC100507547 PPT2-EGFL8 NOTCH4 LOC101929163 HLA-DQB1-AS1
nsv601971 Chr.6:31971488 - 32046679 on Build GRCh38 Gain C4B CYP21A2 CYP21A1P STK19 DXO TNXA TNXB C4A
nsv428141 Chr.6:31903735 - 32125066 on Build GRCh38 Gain+Loss C4B C2-AS1 NELFE ATF6B STK19 DXO TNXA C4A C2 SKIV2L MIR1236 CYP21A2 CFB CYP21A1P TNXB
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion MIR6721 C6orf48 CLIC1 SNORD52 VWA7 STK19 LY6G6E HLA-DRB5 LOC100287329 SNORA38 GPSM3 C4A HSPA1L LTB SKIV2L LSM2 SNORD84 CYP21A2 HSPA1A C6orf10 BTNL2 HLA-DRB1 DDX39B-AS1 ZBTB12 SNORD48 HLA-DRA TNXB SLC44A4 TNF APOM PBX2 MCCD1 ATP6V1G2 NELFE ATF6B SAPCD1-AS1 HCG23 LY6G6D DXO HLA-DRB6 RNF5 TNXA MIR6833 LST1 HSPA1B NCR3 MIR4646 MSH5 SAPCD1 AIF1 MICB PRRT1 MSH5-SAPCD1 CSNK2B NEU1 PPT2 C6orf25 C4B C2-AS1 MIR6832 AGPAT1 HCP5 C2 MIR1236 CFB CYP21A1P AGER DDAH2 EGFL8 ATP6V1G2-DDX39B GPANK1 LY6G6C PRRC2A LY6G5C LY6G5B SNORD117 EHMT2 BAG6 C6orf47 FKBPL LOC100507547 NFKBIL1 LOC102725068 VARS DDX39B LTA ABHD16A LY6G6F PPT2-EGFL8 HCG26 NOTCH4 LOC101929163
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss C6orf48 HLA-B CLIC1 SNORD52 VWA7 STK19 LY6G6E LOC100287329 SNORA38 C4A HSPA1L LTB SKIV2L LSM2 SNORD84 CYP21A2 HSPA1A MICA DDX39B-AS1 ZBTB12 SNORD48 TNXB SLC44A4 TNF APOM MCCD1 ATP6V1G2 NELFE MIR6891 SAPCD1-AS1 LY6G6D DXO TNXA LST1 HSPA1B NCR3 MIR4646 MSH5 SAPCD1 AIF1 MICB MSH5-SAPCD1 CSNK2B NEU1 C6orf25 C4B C2-AS1 MIR6832 HCP5 C2 MIR1236 CFB CYP21A1P DDAH2 ATP6V1G2-DDX39B GPANK1 LY6G6C PRRC2A LY6G5C LY6G5B SNORD117 EHMT2 BAG6 C6orf47 NFKBIL1 LOC102725068 VARS DDX39B LTA ABHD16A LY6G6F HCG26
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion MIR6721 SNORD52 VWA7 LY6G6E LOC100287329 WDR46 TAP1 PSMB8-AS1 HLA-DPA1 GPSM3 C4A LTB PSMB9 LSM2 SNORD84 CYP21A2 RPS18 SLC39A7 C6orf10 HLA-DRB1 HLA-DMA DDX39B-AS1 ZBTB12 SLC44A4 PBX2 MCCD1 ATP6V1G2 NELFE B3GALT4 LST1 MIR4646 MSH5 TAP2 MICB MSH5-SAPCD1 HLA-DQA2 HLA-DPB1 HLA-DQA1 SYNGAP1 NEU1 PPT2 HLA-DOA C2-AS1 HCP5 MIR6834 PFDN6 C2 MIR1236 RXRB CFB CYP21A1P EGFL8 ATP6V1G2-DDX39B LY6G6C LY6G5C EHMT2 BAG6 LOC100507547 BRD2 PSMB8 DAXX PHF1 LTA ABHD16A PPT2-EGFL8 LOC101929163 VPS52 C6orf48 CUTA CLIC1 HLA-DQB2 STK19 MIR3135B HLA-DRB5 ZBTB22 SNORA38 HSPA1L SKIV2L HSPA1A KIFC1 BTNL2 HLA-DQB1 SNORD48 HLA-DRA TNXB TNF APOM MIR219A1 ATF6B SAPCD1-AS1 COL11A2 HCG23 LY6G6D DXO HLA-DRB6 PPP1R2P1 RNF5 TNXA MIR6833 HCG24 HSPA1B NCR3 SAPCD1 AIF1 PRRT1 HLA-DOB MIR6873 CSNK2B C6orf25 C4B RING1 MIR6832 AGPAT1 ZBTB9 HLA-DPB2 HLA-DMB HCG25 AGER DDAH2 MIR5004 GPANK1 LOC100294145 PRRC2A LY6G5B SNORD117 RGL2 C6orf47 FKBPL NFKBIL1 LOC102725068 TAPBP VARS DDX39B LY6G6F HCG26 HSD17B8 NOTCH4 HLA-DQB1-AS1
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion MIR6721 SNORD52 VWA7 LY6G6E LOC100287329 WDR46 TAP1 PSMB8-AS1 HLA-DPA1 GPSM3 C4A LTB PSMB9 LSM2 SNORD84 CYP21A2 RPS18 SLC39A7 C6orf10 HLA-DRB1 HLA-DMA DDX39B-AS1 ZBTB12 SLC44A4 PBX2 MCCD1 ATP6V1G2 NELFE B3GALT4 LST1 MIR4646 MSH5 TAP2 MICB MSH5-SAPCD1 HLA-DQA2 HLA-DPB1 HLA-DQA1 SYNGAP1 NEU1 PPT2 HLA-DOA C2-AS1 HCP5 MIR6834 PFDN6 C2 MIR1236 RXRB CFB CYP21A1P EGFL8 ATP6V1G2-DDX39B LY6G6C LY6G5C EHMT2 BAG6 LOC100507547 BRD2 PSMB8 DAXX PHF1 LTA ABHD16A PPT2-EGFL8 LOC101929163 VPS52 C6orf48 CUTA CLIC1 HLA-DQB2 STK19 MIR3135B HLA-DRB5 ZBTB22 SNORA38 HSPA1L SKIV2L HSPA1A KIFC1 BTNL2 HLA-DQB1 SNORD48 HLA-DRA TNXB TNF APOM MIR219A1 ATF6B SAPCD1-AS1 COL11A2 HCG23 LY6G6D DXO HLA-DRB6 PPP1R2P1 RNF5 TNXA MIR6833 HCG24 HSPA1B NCR3 SAPCD1 AIF1 PRRT1 HLA-DOB MIR6873 CSNK2B C6orf25 C4B RING1 MIR6832 AGPAT1 ZBTB9 HLA-DPB2 HLA-DMB HCG25 AGER DDAH2 MIR5004 GPANK1 LOC100294145 PRRC2A LY6G5B SNORD117 RGL2 C6orf47 FKBPL NFKBIL1 LOC102725068 TAPBP VARS DDX39B LY6G6F HCG26 HSD17B8 NOTCH4 HLA-DQB1-AS1
nsv830628 Chr.6:31919777 - 31979823 on Build GRCh38 Loss C2 SKIV2L MIR1236 C2-AS1 NELFE CFB STK19 DXO
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss MIR6721 C6orf48 HLA-B CLIC1 SNORD52 VWA7 STK19 LY6G6E LOC100287329 SNORA38 GPSM3 C4A HSPA1L LTB SKIV2L LSM2 SNORD84 CYP21A2 HSPA1A C6orf10 MICA BTNL2 DDX39B-AS1 ZBTB12 SNORD48 HLA-DRA TNXB SLC44A4 TNF APOM PBX2 MCCD1 ATP6V1G2 NELFE MIR6891 ATF6B SAPCD1-AS1 HCG23 LY6G6D DXO RNF5 TNXA MIR6833 LST1 HSPA1B NCR3 MIR4646 MSH5 SAPCD1 AIF1 MICB PRRT1 MSH5-SAPCD1 CSNK2B NEU1 PPT2 C6orf25 C4B C2-AS1 MIR6832 AGPAT1 HCP5 C2 MIR1236 CFB CYP21A1P AGER DDAH2 EGFL8 ATP6V1G2-DDX39B GPANK1 LY6G6C PRRC2A LY6G5C LY6G5B SNORD117 EHMT2 BAG6 C6orf47 FKBPL LOC100507547 NFKBIL1 LOC102725068 VARS DDX39B LTA ABHD16A LY6G6F PPT2-EGFL8 HCG26 NOTCH4 LOC101929163
nsv284 Chr.6:31957962 - 32028944 on Build GRCh38 Deletion C4B SKIV2L NELFE CYP21A1P STK19 DXO TNXA C4A

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