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See other DXO CNV Assays ›
Gene Symbol
DXO
Assay Reference Genome
Location

Chr.6:31971927 on build GRCh38
Cytoband
6p21.33
Assay ID Hs01856269_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 1797

Gene Name:

 decapping exoribonuclease

Gene Aliases:

 DOM3L, DOM3Z, NG6, RAI1

Location:

 Chr.6:31969811-31972290 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 1 - Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
DXO NM_005510.3 NP_005501.2
XM_006715005.3 XP_006715068.1
XM_017010329.1 XP_016865818.1
AF059252.1 AAC78603.1
AF059253.1 AAC78604.1
AF059254.1 AAC78605.1
AK310107.1
BC009344.2 AAH09344.1
BC019083.2 AAH19083.1

Target Gene Details

Entrez Gene ID:

 8859

Gene Name:

 serine/threonine kinase 19

Gene Aliases:

 D6S60, D6S60E, G11, HLA-RP1, RP1

Location:

 Chr.6:31971175-31981446 on Build GRCh38

Assay Gene Location:

 Within Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
STK19 NM_004197.1 1 59 NP_004188.1
NM_032454.1 1 59 NP_115830.1
NR_026717.1 2 159
AK302111.1 2 173
AK303438.1 1 97
BC110347.1 2 159 AAI10348.1
BC121128.1
BC121129.1
BC143833.1
L26260.1 1 59 AAA20122.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv601970 Chr.6:31970674 - 31980252 on Build GRCh38 Loss DXO STK19
nsv601971 Chr.6:31971488 - 32046679 on Build GRCh38 Gain CYP21A1P TNXB DXO TNXA C4A STK19 CYP21A2 C4B
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss C6orf48 ATF6B SLC44A4 AGER TNXB HCG23 EGFL8 HLA-DRB5 NELFE AGPAT1 MIR6721 PPT2 LOC100507547 MIR1236 C4A SNORD52 C2-AS1 HLA-DQA1 PRRT1 TNXA STK19 SKIV2L MIR6833 C4B PBX2 PPT2-EGFL8 BTNL2 HLA-DRB6 CFB HLA-DRA CYP21A1P ZBTB12 HSPA1B C6orf10 HLA-DRB1 EHMT2 NOTCH4 RNF5 FKBPL SNORD48 HLA-DQB1-AS1 HSPA1A CYP21A2 C2 GPSM3 HLA-DQB1 LOC101929163 DXO NEU1
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss PBX2 PPT2-EGFL8 ATF6B CFB CYP21A1P AGER TNXB EGFL8 NELFE AGPAT1 NOTCH4 RNF5 MIR6721 PPT2 LOC100507547 FKBPL MIR1236 C4A CYP21A2 C2 GPSM3 C2-AS1 PRRT1 DXO TNXA STK19 SKIV2L MIR6833 C4B
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion MIR4646 NFKBIL1 LOC102725068 SNORD84 C6orf48 ATF6B MICB LOC100287329 SLC44A4 CLIC1 AGER HCP5 TNXB HCG23 EGFL8 ABHD16A HLA-DRB5 NCR3 PRRC2A NELFE DDAH2 AGPAT1 LY6G6D ATP6V1G2 MIR6721 PPT2 LOC100507547 MIR1236 SNORD117 GPANK1 C4A MSH5-SAPCD1 SNORD52 ATP6V1G2-DDX39B LST1 HSPA1L C2-AS1 PRRT1 SNORA38 TNXA STK19 SKIV2L LY6G5C MIR6833 VARS LTB C4B PBX2 HCG26 APOM PPT2-EGFL8 BTNL2 MSH5 LY6G5B HLA-DRB6 LY6G6F CFB C6orf47 LY6G6C LSM2 HLA-DRA SAPCD1-AS1 MCCD1 CYP21A1P AIF1 MIR6832 ZBTB12 HSPA1B C6orf10 HLA-DRB1 EHMT2 C6orf25 CSNK2B LTA NOTCH4 RNF5 SAPCD1 FKBPL SNORD48 HSPA1A CYP21A2 C2 LY6G6E GPSM3 BAG6 DDX39B DDX39B-AS1 LOC101929163 DXO TNF NEU1 VWA7
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion SNORD84 PSMB8 LOC100287329 CUTA HCG23 EGFL8 MIR6873 HLA-DRB5 NCR3 PRRC2A ZBTB22 TAPBP LY6G6D ATP6V1G2 PPT2 PHF1 HLA-DPA1 MIR1236 SNORD52 ATP6V1G2-DDX39B LST1 HSPA1L HSD17B8 TAP1 SNORA38 B3GALT4 MIR6833 VARS LTB C4B MIR5004 PBX2 HCG26 HLA-DQB2 WDR46 PPP1R2P1 HLA-DRB6 CYP21A1P MIR6832 HLA-DMA ZBTB12 PSMB8-AS1 C6orf10 RXRB ZBTB9 C6orf25 HLA-DOB MIR3135B TAP2 LTA RNF5 RING1 SNORD48 HSPA1A CYP21A2 C2 LY6G6E GPSM3 BRD2 HLA-DQB1 MIR219A1 DXO COL11A2 TNF HLA-DQA2 VWA7 MIR4646 HLA-DPB1 NFKBIL1 LOC102725068 C6orf48 ATF6B MICB SLC44A4 HLA-DMB CLIC1 AGER HCP5 TNXB ABHD16A VPS52 RPS18 MIR6834 NELFE DDAH2 AGPAT1 MIR6721 LOC100507547 SNORD117 GPANK1 C4A MSH5-SAPCD1 C2-AS1 HLA-DQA1 PRRT1 TNXA STK19 SKIV2L LY6G5C APOM PPT2-EGFL8 BTNL2 MSH5 LY6G5B SYNGAP1 LY6G6F CFB LOC100294145 C6orf47 LY6G6C LSM2 HLA-DRA SAPCD1-AS1 MCCD1 AIF1 KIFC1 HSPA1B HLA-DOA HLA-DRB1 HLA-DPB2 EHMT2 HCG25 CSNK2B PFDN6 NOTCH4 HCG24 SAPCD1 FKBPL HLA-DQB1-AS1 BAG6 DDX39B DDX39B-AS1 LOC101929163 RGL2 PSMB9 SLC39A7 NEU1 DAXX
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss MIR4646 NFKBIL1 LOC102725068 SNORD84 C6orf48 MICB LOC100287329 MICA SLC44A4 CLIC1 HCP5 TNXB ABHD16A NCR3 PRRC2A NELFE DDAH2 LY6G6D ATP6V1G2 MIR1236 SNORD117 GPANK1 C4A MSH5-SAPCD1 SNORD52 ATP6V1G2-DDX39B LST1 HSPA1L C2-AS1 SNORA38 TNXA STK19 SKIV2L LY6G5C VARS LTB C4B HCG26 APOM MSH5 LY6G5B LY6G6F CFB C6orf47 LY6G6C LSM2 SAPCD1-AS1 MIR6891 MCCD1 CYP21A1P AIF1 MIR6832 ZBTB12 HSPA1B EHMT2 C6orf25 CSNK2B LTA SAPCD1 SNORD48 HSPA1A CYP21A2 C2 LY6G6E BAG6 DDX39B DDX39B-AS1 HLA-B DXO TNF NEU1 VWA7
nsv830628 Chr.6:31919777 - 31979823 on Build GRCh38 Loss C2-AS1 DXO MIR1236 CFB STK19 SKIV2L C2 NELFE
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion SNORD84 PSMB8 LOC100287329 CUTA HCG23 EGFL8 MIR6873 HLA-DRB5 NCR3 PRRC2A ZBTB22 TAPBP LY6G6D ATP6V1G2 PPT2 PHF1 HLA-DPA1 MIR1236 SNORD52 ATP6V1G2-DDX39B LST1 HSPA1L HSD17B8 TAP1 SNORA38 B3GALT4 MIR6833 VARS LTB C4B MIR5004 PBX2 HCG26 HLA-DQB2 WDR46 PPP1R2P1 HLA-DRB6 CYP21A1P MIR6832 HLA-DMA ZBTB12 PSMB8-AS1 C6orf10 RXRB ZBTB9 C6orf25 HLA-DOB MIR3135B TAP2 LTA RNF5 RING1 SNORD48 HSPA1A CYP21A2 C2 LY6G6E GPSM3 BRD2 HLA-DQB1 MIR219A1 DXO COL11A2 TNF HLA-DQA2 VWA7 MIR4646 HLA-DPB1 NFKBIL1 LOC102725068 C6orf48 ATF6B MICB SLC44A4 HLA-DMB CLIC1 AGER HCP5 TNXB ABHD16A VPS52 RPS18 MIR6834 NELFE DDAH2 AGPAT1 MIR6721 LOC100507547 SNORD117 GPANK1 C4A MSH5-SAPCD1 C2-AS1 HLA-DQA1 PRRT1 TNXA STK19 SKIV2L LY6G5C APOM PPT2-EGFL8 BTNL2 MSH5 LY6G5B SYNGAP1 LY6G6F CFB LOC100294145 C6orf47 LY6G6C LSM2 HLA-DRA SAPCD1-AS1 MCCD1 AIF1 KIFC1 HSPA1B HLA-DOA HLA-DRB1 HLA-DPB2 EHMT2 HCG25 CSNK2B PFDN6 NOTCH4 HCG24 SAPCD1 FKBPL HLA-DQB1-AS1 BAG6 DDX39B DDX39B-AS1 LOC101929163 RGL2 PSMB9 SLC39A7 NEU1 DAXX
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss MIR4646 NFKBIL1 LOC102725068 SNORD84 C6orf48 ATF6B MICB LOC100287329 MICA SLC44A4 CLIC1 AGER HCP5 TNXB HCG23 EGFL8 ABHD16A NCR3 PRRC2A NELFE DDAH2 AGPAT1 LY6G6D ATP6V1G2 MIR6721 PPT2 LOC100507547 MIR1236 SNORD117 GPANK1 C4A MSH5-SAPCD1 SNORD52 ATP6V1G2-DDX39B LST1 HSPA1L C2-AS1 PRRT1 SNORA38 TNXA STK19 SKIV2L LY6G5C MIR6833 VARS LTB C4B PBX2 HCG26 APOM PPT2-EGFL8 BTNL2 MSH5 LY6G5B LY6G6F CFB C6orf47 LY6G6C LSM2 HLA-DRA SAPCD1-AS1 MIR6891 MCCD1 CYP21A1P AIF1 MIR6832 ZBTB12 HSPA1B C6orf10 EHMT2 C6orf25 CSNK2B LTA NOTCH4 RNF5 SAPCD1 FKBPL SNORD48 HSPA1A CYP21A2 C2 LY6G6E GPSM3 BAG6 DDX39B DDX39B-AS1 LOC101929163 HLA-B DXO TNF NEU1 VWA7
nsv5247 Chr.6:31957962 - 32055439 on Build GRCh38 Deletion CYP21A1P TNXB DXO TNXA C4A STK19 SKIV2L CYP21A2 NELFE C4B

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