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See other PRPF31 CNV Assays ›
Gene Symbol
PRPF31
Assay Reference Genome
Location

Chr.19:54115495 on build GRCh38
Cytoband
19q13.42
Assay ID Hs01877341_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 26121

Gene Name:

 pre-mRNA processing factor 31

Gene Aliases:

 NY-BR-99, PRP31, RP11, SNRNP61

Location:

 Chr.19:54115410-54131719 on Build GRCh38

Assay Gene Location:

 Within Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PRPF31 NM_015629.3 1 86 NP_056444.3
XM_006723137.3 XP_006723200.1
AY040822.1 AAK77986.1
BC117389.1
CN306666.1 1 86
DQ426885.1

Target Gene Details

Entrez Gene ID:

 29844

Gene Name:

 TCF3 fusion partner

Gene Aliases:

 FB1, INO80F, amida

Location:

 Chr.19:54107013-54115675 on Build GRCh38

Assay Gene Location:

 Within Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TFPT NM_013342.3 1 181 NP_037474.1
AF052052.1 AAD45182.1
AK310627.1 1 163
AK310647.1 1 152
BI820344.1 1 181

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv510773 Chr.19:54017180 - 54132236 on Build GRCh38 Deletion VSTM1 PRPF31 TFPT NDUFA3 TARM1 OSCAR
nsv515623 Chr.19:54102901 - 54179150 on Build GRCh38 Loss MBOAT7 CNOT3 PRPF31 TFPT NDUFA3 TMC4 LENG1
nsv953613 Chr.19:54097214 - 54198733 on Build GRCh38 Deletion TSEN34 MBOAT7 CNOT3 PRPF31 TFPT NDUFA3 TMC4 LENG1 OSCAR
esv2718812 Chr.19:53184636 - 54322450 on Build GRCh38 Deletion MIR517C MIR4752 LOC284379 CACNG6 MIR526B MIR517B LILRB2 ZNF677 MIR371A MIR519D MIR372 MIR518C VN1R4 CNOT3 MIR520H MIR525 MIR526A2 OSCAR MIR520B MIR520C MIR519E MIR519C CACNG7 ZNF331 ZNF665 TFPT MIR522 MIR516A1 MIR520A MIR521-1 MIR518F MIR518B MIR516B2 MIR1283-1 MIR371B LILRA6 MIR520G MIR518D DPRX MIR498 MIR935 ZNF818P LENG1 MIR518A1 LILRA5 ZNF525 MIR519A1 MYADM MIR512-2 NLRP12 MIR524 NDUFA3 TARM1 ZNF813 MIR373 MIR520F MIR527 RPS9 MIR520D VSTM1 MIR515-2 PRPF31 MIR515-1 MIR518E ZNF765 TMC4 MIR516A2 LOC105372457 MIR523 BIRC8 CACNG8 TSEN34 MBOAT7 MIR518A2 LILRB5 ZNF761 MIR512-1 MIR1283-2 LILRB3 MIR521-2 VN1R2 TPM3P9 MIR519A2 MIR517A MIR526A1 ZNF845 PRKCG MIR520E MIR516B1 MIR1323 MIR519B FAM90A27P
nsv470157 Chr.19:54063999 - 54127773 on Build GRCh38 Loss PRPF31 TFPT NDUFA3 TARM1 OSCAR
nsv833877 Chr.19:53951529 - 54117323 on Build GRCh38 Loss CACNG6 VSTM1 PRPF31 MIR935 TFPT NDUFA3 TARM1 OSCAR CACNG8

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