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See other SIGIRR CNV Assays ›
Gene Symbol
SIGIRR
Assay Reference Genome
Location

Chr.11:406956 on build GRCh38
Cytoband
11p15.5
Assay ID Hs01883206_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 59307

Gene Name:

 single Ig and TIR domain containing

Gene Aliases:

 IL-1R8, TIR8

Location:

 Chr.11:405716-417454 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 8 - Exon 9
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SIGIRR NM_001135053.1 NP_001128525.1
NM_001135054.1 NP_001128526.1
NM_021805.2 NP_068577.2
XM_005253044.2 XP_005253101.1
XM_005253045.1 XP_005253102.1
XM_005253046.1 XP_005253103.1
XM_005253048.4 XP_005253105.1
XM_017018099.1 XP_016873588.1
XM_017018100.1 XP_016873589.1
AK025099.1 BAB15066.1
AK093427.1 6 916
AK172830.1 BAD18795.1
AY358342.1 AAQ88708.1
BC003591.1 AAH03591.1
BC025953.1 AAH25953.1
BC106007.1 AAI06008.1
BX369506.2
CR457338.1 CAG33619.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv527327 Chr.11:295343 - 620599 on Build GRCh38 Loss LOC101059906 IFITM3 ANO9 LOC143666 IRF7 PGGHG B4GALNT4 IFITM1 HRAS RNH1 MIR210 IFITM5 PHRF1 IFITM2 PKP3 RASSF7 LMNTD2 CDHR5 MIR210HG PTDSS2 LRRC56 SIGIRR
nsv469923 Chr.11:378188 - 1302334 on Build GRCh38 Loss LOC101059906 TALDO1 SCT RPLP2 ANO9 LOC143666 HRAS CHID1 MIR210 POLR2L TOLLIP PNPLA2 PDDC1 CD151 PIDD1 PTDSS2 SLC25A22 TSPAN4 MUC5B SNORA52 IRF7 B4GALNT4 PANO1 TMEM80 RNH1 PHRF1 MIR6744 CEND1 DEAF1 MUC5AC DRD4 LOC171391 PKP3 RASSF7 LMNTD2 MUC6 MUC2 AP2A2 EPS8L2 CDHR5 MIR210HG LRRC56 LOC101927503 SIGIRR CRACR2B
nsv552776 Chr.11:366710 - 432436 on Build GRCh38 Loss ANO9 PKP3 B4GALNT4 SIGIRR
nsv951268 Chr.11:368601 - 503700 on Build GRCh38 Deletion ANO9 PKP3 B4GALNT4 RNH1 PTDSS2 SIGIRR
nsv552770 Chr.11:356090 - 444628 on Build GRCh38 Gain ANO9 PKP3 B4GALNT4 SIGIRR
dgv1505n54 Chr.11:198510 - 470331 on Build GRCh38 Gain IFITM3 ANO9 BET1L PGGHG B4GALNT4 IFITM1 RIC8A ODF3 IFITM5 IFITM2 PKP3 SIRT3 PSMD13 MIR6743 PTDSS2 NLRP6 SIGIRR
nsv1159790 Chr.11:340219 - 491334 on Build GRCh38 Deletion ANO9 PKP3 B4GALNT4 PTDSS2 SIGIRR
dgv182e199 Chr.11:349830 - 943372 on Build GRCh38 Deletion LOC101059906 TALDO1 SCT RPLP2 ANO9 LOC143666 HRAS CHID1 MIR210 POLR2L PNPLA2 PDDC1 CD151 PIDD1 PTDSS2 SLC25A22 TSPAN4 SNORA52 IRF7 B4GALNT4 PANO1 TMEM80 RNH1 PHRF1 CEND1 DEAF1 DRD4 LOC171391 PKP3 RASSF7 LMNTD2 AP2A2 EPS8L2 CDHR5 MIR210HG LRRC56 SIGIRR CRACR2B
nsv552822 Chr.11:403545 - 408352 on Build GRCh38 Loss PKP3 SIGIRR

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More Information


Additional Information:

For this assay, SNP(s) [rs112731199] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

transmembrane signal receptor

Gene Ontology Categories:

Function(s) Process(es)


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