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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89739676 on build GRCh38
Cytoband
16q24.3
Assay ID Hs01892962_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Intron 41
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
AK299282.1
X99226.1 CAA67610.1

Target Gene Details

Entrez Gene ID:

 92822

Gene Name:

 zinc finger protein 276

Gene Aliases:

 CENP-Z, CENPZ, ZADT, ZFP276, ZNF477

Location:

 Chr.16:89720368-89740925 on Build GRCh38

Assay Gene Location:

 Within Exon 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ZNF276 NM_001113525.1 11 3372 NP_001106997.1
NM_152287.3 11 3362 NP_689500.2
NR_110122.1 11 3447
NR_110126.1 11 3330
NR_110128.1 11 3253
NR_110129.1 11 3342
XM_017023890.1 10 3297 XP_016879379.1
AK056405.1 11 3398
AK096004.1 1 1134
BC107603.1 11 3187 AAI07604.1
BM972950.1 1 245
BQ432535.1 1 316

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1931 Chr.16:89713649 - 89746701 on Build GRCh38 Insertion FANCA VPS9D1 ZNF276 VPS9D1-AS1
nsv457624 Chr.16:89738447 - 89915950 on Build GRCh38 Loss TCF25 FANCA ZNF276 LOC105371419 LOC107984817 SPIRE2
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion SPATA2L FANCA VPS9D1 CDK10 ZNF276 VPS9D1-AS1
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss CHMP1A TCF25 SPATA2L VPS9D1 CDK10 CENPBD1 GAS8-AS1 TUBB3 DPEP1 FANCA GAS8 DEF8 MC1R ZNF276 VPS9D1-AS1 LOC105371419 AFG3L1P LOC107984817 SPIRE2 DBNDD1 SPATA33
nsv457623 Chr.16:89664419 - 89853617 on Build GRCh38 Gain SPATA2L FANCA VPS9D1 CDK10 ZNF276 VPS9D1-AS1 LOC105371419 LOC107984817 SPIRE2 SPATA33
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss CHMP1A SPATA2L LOC100287036 VPS9D1 LOC105371414 CENPBD1 GAS8-AS1 SNORD68 LOC101927817 ANKRD11 PRDM7 LOC107984817 DBNDD1 TCF25 FAM157C CDK10 TUBB3 SPG7 URAHP CPNE7 ZNF778 RPL13 DPEP1 FANCA GAS8 DEF8 MC1R TUBB8P7 ZNF276 VPS9D1-AS1 LOC105371419 AFG3L1P SPIRE2 SPATA33
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss FANCA ZNF276 LOC105371419 LOC107984817 SPIRE2
nsv833330 Chr.16:89678466 - 89741783 on Build GRCh38 Loss SPATA2L FANCA VPS9D1 CDK10 ZNF276 VPS9D1-AS1
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss CHMP1A CYBA LOC100287036 LOC105371414 GAS8-AS1 LOC105371409 LOC101927817 RNF166 CDH15 PRDM7 LOC339059 ACSF3 LOC100289580 LOC107984817 GALNS DBNDD1 MIR4722 CDK10 PIEZO1 SPG7 URAHP CTU2 LOC101927793 CBFA2T3 RPL13 LOC100129697 SLC22A31 IL17C VPS9D1-AS1 LOC105371419 SPATA2L VPS9D1 CENPBD1 LINC00304 SNAI3 SNORD68 ANKRD11 MVD TRAPPC2L APRT LOC400558 TCF25 FAM157C SNAI3-AS1 TUBB3 PABPN1L CDT1 CPNE7 ZNF778 DPEP1 FANCA GAS8 DEF8 MC1R TUBB8P7 ZNF276 AFG3L1P LOC107987238 SPIRE2 SPATA33
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion CHMP1A SPATA2L VPS9D1 CDK10 SNORD68 SPG7 CPNE7 RPL13 DPEP1 FANCA ZNF276 VPS9D1-AS1 SPATA33

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