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See other TRIM40 CNV Assays ›
Gene Symbol
TRIM40
Assay Reference Genome
Location

Chr.6:30137109 on build GRCh38
Cytoband
6p22.1
Assay ID Hs01893670_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 135644

Gene Name:

 tripartite motif containing 40

Gene Aliases:

 RNF35

Location:

 Chr.6:30135998-30148773 on Build GRCh38

Assay Gene Location:

 Within Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM40 NM_001286633.1 2 459 NP_001273562.1
NM_138700.4 1 377 NP_619645.1
XM_011514305.1 2 890 XP_011512607.1
XM_011514306.1 3 756 XP_011512608.1
XM_011514308.1 2 890 XP_011512610.1
XM_011514309.1 2 890 XP_011512611.1
AF489517.1 1 100 AAM09503.1
BC060785.1 2 459 AAH60785.1
CB990357.1 2 486

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion DDR1 MAS1L CDSN GABBR1 TRIM26 HCG8 TRIM40 MIR4640 UBD NRM OR10C1 LOC101929006 DHX16 DPCR1 MDC1-AS1 CCHCR1 HLA-E POU5F1 RPP21 OR5V1 PSORS1C1 ZNRD1 TRIM31-AS1 HLA-A ATAT1 HLA-B C6orf15 IFITM4P HCG17 PPP1R10 ZNRD1ASP OR12D3 HCG4B GNL1 MIR6891 TCF19 OR2H2 MDC1 MIR877 HLA-G HCG27 HLA-C TRIM10 VARS2 MRPS18B HCG20 PSORS1C3 OR2J2 C6orf136 HCG18 FLOT1 TRIM15 MUC22 GTF2H4 HLA-J IER3 TRIM39 TRIM31 PRR3 OR14J1 TRIM39-RPP21 HLA-F HCG22 TUBB MUC21 MICA ZFP57 HLA-K HLA-L RNF39 SNORD32B HCG9 LOC105375014 LOC554223 ABCF1 HCG4 PPP1R11 HLA-H LINC00243 PSORS1C2 MOG OR2H1 SFTA2 LINC01015 OR12D2 PPP1R18 OR11A1 HLA-F-AS1
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion LINC01623 DDR1 MAS1L LOC100129636 CDSN GABBR1 TRIM26 HCG16 HCG8 OR2J3 TRIM40 MIR4640 UBD NRM OR10C1 LOC101929006 DHX16 DPCR1 OR2B3 MDC1-AS1 CCHCR1 HLA-E POU5F1 RPP21 OR5V1 PSORS1C1 ZNRD1 TRIM31-AS1 HLA-A ATAT1 C6orf15 ZNF311 IFITM4P TRIM27 LINC00533 HCG17 PPP1R10 ZNRD1ASP OR12D3 HCG14 HCG4B GNL1 TCF19 OR2H2 MDC1 MIR877 HLA-G HCG27 TRIM10 VARS2 MRPS18B HCG20 PSORS1C3 OR2J2 C6orf136 HCG18 FLOT1 TRIM15 LINC01556 OR2W1 MUC22 GTF2H4 HLA-J IER3 TRIM39 TRIM31 PRR3 OR14J1 TRIM39-RPP21 HLA-F HCG22 TUBB MUC21 ZFP57 HLA-K HLA-L RNF39 SNORD32B HCG9 LOC105375014 LOC554223 ABCF1 HCG4 PPP1R11 HLA-H LINC00243 PSORS1C2 MOG OR2H1 SFTA2 LINC01015 OR12D2 PPP1R18 OR11A1 HLA-F-AS1
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion DDR1 CDSN TRIM26 HCG8 TRIM40 MIR4640 NRM DHX16 DPCR1 MDC1-AS1 CCHCR1 HLA-E POU5F1 RPP21 PSORS1C1 ZNRD1 TRIM31-AS1 HLA-A ATAT1 C6orf15 IFITM4P HCG17 PPP1R10 ZNRD1ASP HCG4B GNL1 TCF19 MDC1 MIR877 HLA-G HCG27 HLA-C TRIM10 VARS2 MRPS18B HCG20 PSORS1C3 C6orf136 HCG18 FLOT1 TRIM15 MUC22 GTF2H4 HLA-J IER3 TRIM39 TRIM31 PRR3 TRIM39-RPP21 HLA-F HCG22 TUBB MUC21 HLA-K HLA-L RNF39 HCG9 LOC105375014 LOC554223 ABCF1 HCG4 PPP1R11 HLA-H LINC00243 PSORS1C2 SFTA2 PPP1R18 HLA-F-AS1
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss DDR1 CDSN TRIM26 HCG8 TRIM40 MIR4640 NRM DHX16 DPCR1 MDC1-AS1 CCHCR1 HLA-E POU5F1 RPP21 PSORS1C1 ZNRD1 TRIM31-AS1 HLA-A ATAT1 C6orf15 HCG17 PPP1R10 ZNRD1ASP HCG4B GNL1 TCF19 MDC1 MIR877 HCG27 HLA-C TRIM10 VARS2 MRPS18B HCG20 PSORS1C3 C6orf136 HCG18 FLOT1 TRIM15 MUC22 GTF2H4 HLA-J IER3 TRIM39 TRIM31 PRR3 TRIM39-RPP21 HCG22 TUBB MUC21 HLA-K HLA-L RNF39 HCG9 LOC105375014 ABCF1 PPP1R11 HLA-H LINC00243 PSORS1C2 SFTA2 PPP1R18
esv2731777 Chr.6:29943636 - 30260756 on Build GRCh38 Deletion ZNRD1 TRIM31-AS1 TRIM10 HLA-A HLA-L RNF39 TRIM26 HCG9 TRIM15 HCG8 HCG17 PPP1R11 TRIM40 ZNRD1ASP HLA-J TRIM31
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication DDR1 CDSN TRIM26 HCG8 TRIM40 MIR4640 HCP5 NRM DHX16 DPCR1 MDC1-AS1 CCHCR1 HLA-E POU5F1 RPP21 PSORS1C1 ZNRD1 TRIM31-AS1 ATAT1 HLA-B HCG26 C6orf15 HCG17 PPP1R10 ZNRD1ASP GNL1 MIR6891 TCF19 MDC1 MIR877 HCG27 HLA-C TRIM10 VARS2 MRPS18B HCG20 PSORS1C3 C6orf136 HCG18 FLOT1 TRIM15 MUC22 GTF2H4 LOC102725068 HLA-J IER3 TRIM39 TRIM31 PRR3 TRIM39-RPP21 HCG22 TUBB MUC21 MICA HLA-L RNF39 LOC105375014 ABCF1 PPP1R11 LINC00243 PSORS1C2 SFTA2 PPP1R18

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