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See other CPSF3L CNV Assays ›
Gene Symbol
CPSF3L
Assay Reference Genome
Location

Chr.1:1319381 on build GRCh38
Cytoband
1p36.33
Assay ID Hs01897984_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 54973

Gene Name:

 cleavage and polyadenylation specific factor 3-like

Gene Aliases:

 CPSF73L, INT11, INTS11, RC-68, RC68

Location:

 Chr.1:1311585-1324687 on Build GRCh38

Assay Gene Location:

 Within Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CPSF3L NM_001256456.1 6 896 NP_001243385.1
NM_001256460.1 5 530 NP_001243389.1
NM_001256462.1 NP_001243391.1
NM_001256463.1 NP_001243392.1
NM_017871.5 4 423 NP_060341.2
XM_011541647.1 6 574 XP_011539949.1
XM_011541648.1 6 578 XP_011539950.1
XM_011541650.1 XP_011539952.1
XM_017001557.1 XP_016857046.1
XM_017001558.1 XP_016857047.1
AK021939.1 BAB13943.1
AK022675.1 2 1744
AK023356.1 4 406 BAB14541.1
AK027767.1 3 873
AK056652.1 6 818
AK058018.1
AK092190.1
AK291387.1 6 859
AK297350.1 5 480
AL136813.1 4 402 CAB66747.1
BC000675.2 AAH00675.2
BC007978.2 4 385 AAH07978.1
BC008041.2 AAH08041.1
BC020199.1 AAH20199.1
CR533557.1 4 344 CAG38588.1
DC295791.1 5 452
DC299237.1 4 423
DC299993.1 4 407

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC107984841 NOC2L CDK11B SSU72 AGRN ACAP3 OR4F29 UBE2J2 ISG15 MIR200B LOC100134822 LOC105378592 LOC105378949 TNFRSF4 MMP23B FAM87B ATAD3A MTND2P28 MIR6859-1 LINC01342 LOC107985729 ATAD3B SDF4 NADK DDX11L1 MIR200A CALML6 PRKCZ FAAP20 LOC105378948 MRPL20 MORN1 LOC100132287 OR4F5 LOC105378591 LOC105378947 GABRD ANKRD65 TTLL10 RNF223 PUSL1 MIR6859-2 MIR429 LOC102724312 ATAD3C LOC100288069 PERM1 CCNL2 TTLL10-AS1 C1orf159 HES4 CFAP74 LOC107985728 MIR1302-2 CPSF3L PLEKHN1 LOC105378589 DVL1 VWA1 LOC148413 TMEM240 MTND1P23 OR4F16 B3GALT6 LINC01128 WASH7P MIR6808 SLC35E2B SAMD11 MMP23A MIR6723 LOC729737 LOC100129534 MIR6726 TNFRSF18 LOC101928626 MIR6727 MIB2 CDK11A LOC284600 LOC100288175 LOC100506504 FAM132A SKI SLC35E2 LINC00115 LOC100130417 TAS1R3 LOC100133331 MXRA8 AURKAIP1 FAM138A SCNN1D CPTP FNDC10 GNB1 LOC100287934 FAM41C TMEM52 LOC102725121 TMEM88B KLHL17
nsv544971 Chr.1:1294063 - 1351426 on Build GRCh38 Loss TAS1R3 DVL1 ACAP3 PUSL1 MIR6726 MIR6727 CPSF3L CPTP MIR6808
nsv544969 Chr.1:1290683 - 1374597 on Build GRCh38 Loss TAS1R3 DVL1 ACAP3 PUSL1 MXRA8 AURKAIP1 MIR6726 MIR6727 SCNN1D CPSF3L CPTP MIR6808
dgv7n100 Chr.1:1306835 - 1379057 on Build GRCh38 Loss TAS1R3 DVL1 ACAP3 PUSL1 MXRA8 AURKAIP1 MIR6727 CPSF3L CPTP MIR6808
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss B3GALT6 MIR6808 TTLL10 TAS1R3 RNF223 ACAP3 PUSL1 UBE2J2 MXRA8 AURKAIP1 MIR429 MIR200B TNFRSF4 SCNN1D CPTP LINC01342 MIR6726 TTLL10-AS1 C1orf159 TNFRSF18 SDF4 MIR200A MIR6727 CPSF3L DVL1 FAM132A
dgv6n100 Chr.1:1301750 - 1362354 on Build GRCh38 Gain+Loss TAS1R3 DVL1 ACAP3 PUSL1 MXRA8 MIR6727 CPSF3L CPTP MIR6808
esv3584992 Chr.1:1314419 - 1330342 on Build GRCh38 Gain CPSF3L CPTP
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication B3GALT6 AGRN TTLL10 TAS1R3 RNF223 ACAP3 PUSL1 UBE2J2 MIR429 MIR200B TNFRSF4 SCNN1D CPTP LINC01342 MIR6726 TTLL10-AS1 C1orf159 TNFRSF18 SDF4 MIR200A MIR6727 CPSF3L LOC100288175 LOC105378948 FAM132A
nsv1160788 Chr.1:1282706 - 1376336 on Build GRCh38 Deletion TAS1R3 DVL1 ACAP3 PUSL1 MXRA8 AURKAIP1 MIR6726 MIR6727 SCNN1D CPSF3L CPTP MIR6808
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss NOC2L B3GALT6 CDK11B SSU72 AGRN LINC01128 MIR6808 SLC35E2B SAMD11 ACAP3 MMP23A UBE2J2 ISG15 MIR200B TNFRSF4 MMP23B FAM87B ATAD3A LINC01342 LOC107985729 ATAD3B MIR6726 TNFRSF18 SDF4 NADK MIR200A MIR6727 MIB2 CDK11A LOC284600 LOC100288175 LOC105378948 MRPL20 FAM132A SLC35E2 LINC00115 ANKRD65 TTLL10 LOC100130417 TAS1R3 RNF223 PUSL1 MXRA8 AURKAIP1 MIR429 LOC102724312 ATAD3C LOC100288069 SCNN1D CPTP FNDC10 PERM1 CCNL2 LOC100287934 TTLL10-AS1 C1orf159 HES4 LOC107985728 FAM41C CPSF3L PLEKHN1 DVL1 VWA1 TMEM88B LOC148413 TMEM240 KLHL17
esv3890636 Chr.1:1304555 - 1353203 on Build GRCh38 Loss TAS1R3 DVL1 ACAP3 PUSL1 MXRA8 MIR6727 CPSF3L CPTP MIR6808
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion B3GALT6 CDK11B SSU72 ANKRD65 MIR6808 TTLL10 TAS1R3 ACAP3 PUSL1 UBE2J2 MXRA8 AURKAIP1 MIR429 LOC102724312 MIR200B TNFRSF4 MMP23B ATAD3C SCNN1D ATAD3A CPTP FNDC10 LINC01342 CCNL2 LOC107985729 ATAD3B MIR6726 TTLL10-AS1 C1orf159 TNFRSF18 SDF4 MIR200A MIR6727 CPSF3L MIB2 DVL1 VWA1 TMEM88B MRPL20 LOC148413 TMEM240 FAM132A
nsv1000169 Chr.1:1281678 - 1362354 on Build GRCh38 Gain TAS1R3 DVL1 ACAP3 PUSL1 MXRA8 MIR6726 MIR6727 SCNN1D CPSF3L CPTP MIR6808
esv2758912 Chr.1:1263940 - 1384492 on Build GRCh38 Loss MIR6726 MIR6727 CPSF3L MIR6808 TAS1R3 DVL1 ACAP3 PUSL1 UBE2J2 MXRA8 AURKAIP1 SCNN1D CPTP
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain NOC2L B3GALT6 ANKRD65 AGRN MIR6808 TTLL10 LOC100130417 TAS1R3 SAMD11 RNF223 ACAP3 PUSL1 UBE2J2 MXRA8 AURKAIP1 MIR429 ISG15 MIR200B TNFRSF4 SCNN1D CPTP PERM1 LINC01342 CCNL2 MIR6726 TTLL10-AS1 C1orf159 HES4 LOC107985728 TNFRSF18 SDF4 MIR200A MIR6727 CPSF3L PLEKHN1 DVL1 LOC284600 LOC100288175 TMEM88B LOC105378948 MRPL20 LOC148413 FAM132A KLHL17
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain B3GALT6 MIR6726 TTLL10-AS1 TNFRSF18 SDF4 MIR200A MIR6727 CPSF3L TTLL10 ACAP3 PUSL1 UBE2J2 MIR429 MIR200B TNFRSF4 SCNN1D FAM132A

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


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