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See other PPT2 CNV Assays ›
Gene Symbol
PPT2
Assay Reference Genome
Location

Chr.6:32162890 on build GRCh38
Cytoband
6p21.32
Assay ID Hs01912653_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 9374

Gene Name:

 palmitoyl-protein thioesterase 2

Gene Aliases:

 C6orf8, G14, PPT-2

Location:

 Chr.6:32153452-32163681 on Build GRCh38

Assay Gene Location:

 Within Exon 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PPT2 NM_001204103.1 9 1253 NP_001191032.1
NM_005155.6 9 1263 NP_005146.4
NM_138717.2 9 1042 NP_619731.2
AF020543.1 9 1208 AAB80730.1
AL110128.1 9 970 CAB53659.1
BC001355.2 9 1077 AAH01355.1
CR533546.1 8 867 CAG38577.1
Y17958.1 9 1157 CAB46981.1

Target Gene Details

Entrez Gene ID:

 100532746

Gene Name:

 PPT2-EGFL8 readthrough (NMD candidate)

Gene Aliases:

 -

Location:

 Chr.6:32153999-32168285 on Build GRCh38

Assay Gene Location:

 Within Intron 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PPT2-EGFL8 NR_037861.1
AB209572.1 BAD92809.1
AF020544.1 AAB80731.1
AK290473.1
AK296648.1
AK307427.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss LOC100507547 ATF6B AGER NOTCH4 RNF5 AGPAT1 PPT2-EGFL8 FKBPL TNXB MIR6833 PBX2 EGFL8 GPSM3 MIR6721 PPT2 PRRT1
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss SNORD48 HSPA1A AGER RNF5 TNXA C4B CYP21A1P PBX2 BTNL2 C4A MIR1236 PRRT1 LOC100507547 NEU1 SNORD52 C6orf48 HLA-DQB1-AS1 HLA-DRB5 SLC44A4 EHMT2 DXO TNXB HLA-DQA1 HLA-DRB1 MIR6833 STK19 EGFL8 LOC101929163 PPT2 HSPA1B SKIV2L ATF6B C2 GPSM3 MIR6721 CYP21A2 C6orf10 C2-AS1 CFB NOTCH4 NELFE HLA-DRB6 AGPAT1 ZBTB12 PPT2-EGFL8 HLA-DRA FKBPL HCG23 HLA-DQB1
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss ATF6B AGER RNF5 TNXA C4B CYP21A1P HLA-DQA2 PBX2 BTNL2 C4A GPSM3 MIR6721 CYP21A2 HLA-DQB2 PRRT1 C6orf10 LOC100507547 NOTCH4 HLA-DRB6 AGPAT1 HLA-DQB1-AS1 HLA-DRB5 PPT2-EGFL8 HLA-DRA FKBPL HCG23 TNXB HLA-DQA1 HLA-DRB1 MIR6833 EGFL8 LOC101929163 PPT2 MIR3135B HLA-DQB1
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss ATF6B AGER RNF5 TNXA C4B CYP21A1P C2 PBX2 C4A GPSM3 MIR6721 CYP21A2 MIR1236 PRRT1 LOC100507547 C2-AS1 CFB NOTCH4 NELFE AGPAT1 PPT2-EGFL8 FKBPL DXO TNXB MIR6833 STK19 EGFL8 PPT2 SKIV2L
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion SNORD48 HSPA1A MIR6832 AGER RNF5 APOM BAG6 LTB TNXA C4B CYP21A1P SAPCD1 PRRC2A SNORD84 PBX2 BTNL2 C4A MIR1236 PRRT1 MSH5 CSNK2B HCP5 LOC100507547 NEU1 SNORD52 MICB C6orf48 LST1 HSPA1L HLA-DRB5 GPANK1 SLC44A4 EHMT2 DXO LTA TNXB LY6G6D HLA-DRB1 MIR6833 STK19 EGFL8 TNF LOC101929163 PPT2 HSPA1B SKIV2L AIF1 ABHD16A DDX39B-AS1 ATF6B LOC100287329 LSM2 NFKBIL1 LY6G6C ATP6V1G2-DDX39B C2 VARS C6orf47 GPSM3 MIR6721 CYP21A2 LY6G6F VWA7 SAPCD1-AS1 C6orf10 C2-AS1 CFB SNORD117 NOTCH4 LY6G6E NELFE HLA-DRB6 LY6G5B DDX39B AGPAT1 ZBTB12 NCR3 PPT2-EGFL8 HLA-DRA LOC102725068 FKBPL HCG23 HCG26 ATP6V1G2 C6orf25 MCCD1 MSH5-SAPCD1 CLIC1 MIR4646 DDAH2 SNORA38 LY6G5C
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion RNF5 HLA-DOA TNXA HLA-DMB C4B SAPCD1 PRRC2A HLA-DQA2 PBX2 HLA-DQB2 PRRT1 MSH5 CSNK2B HCP5 LOC100507547 PSMB8-AS1 MICB C6orf48 LST1 HLA-DQB1-AS1 HCG25 RXRB EHMT2 LTA TNXB LY6G6D DAXX EGFL8 ZBTB9 LOC101929163 MIR3135B HSPA1B DDX39B-AS1 MIR6834 ATF6B LOC100287329 LSM2 B3GALT4 HLA-DMA BRD2 TAP1 C6orf47 MIR6721 LY6G6F LOC100294145 RING1 SNORD117 NOTCH4 LY6G6E HLA-DRB6 SLC39A7 LY6G5B MIR5004 AGPAT1 ZBTB12 WDR46 LOC102725068 HCG23 PPP1R2P1 HCG26 ATP6V1G2 HLA-DPB1 C6orf25 MSH5-SAPCD1 CLIC1 COL11A2 MIR4646 SNORA38 LY6G5C SNORD48 HSPA1A MIR6832 AGER APOM BAG6 LTB HLA-DOB CYP21A1P SNORD84 ZBTB22 BTNL2 C4A CUTA MIR219A1 MIR1236 NEU1 SNORD52 HCG24 HSPA1L HLA-DRB5 GPANK1 SLC44A4 DXO HLA-DQA1 PHF1 TAPBP HLA-DRB1 RPS18 MIR6833 PSMB8 STK19 PFDN6 TNF KIFC1 PPT2 SKIV2L AIF1 ABHD16A SYNGAP1 NFKBIL1 LY6G6C TAP2 PSMB9 ATP6V1G2-DDX39B HLA-DPA1 HLA-DPB2 C2 VARS GPSM3 CYP21A2 VWA7 SAPCD1-AS1 C6orf10 C2-AS1 CFB NELFE DDX39B RGL2 NCR3 PPT2-EGFL8 HLA-DRA HSD17B8 FKBPL MCCD1 MIR6873 VPS52 HLA-DQB1 DDAH2
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss LOC100507547 ATF6B AGER NOTCH4 RNF5 AGPAT1 PPT2-EGFL8 FKBPL TNXB MIR6833 PBX2 EGFL8 GPSM3 MIR6721 PPT2 PRRT1
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion RNF5 HLA-DOA TNXA HLA-DMB C4B SAPCD1 PRRC2A HLA-DQA2 PBX2 HLA-DQB2 PRRT1 MSH5 CSNK2B HCP5 LOC100507547 PSMB8-AS1 MICB C6orf48 LST1 HLA-DQB1-AS1 HCG25 RXRB EHMT2 LTA TNXB LY6G6D DAXX EGFL8 ZBTB9 LOC101929163 MIR3135B HSPA1B DDX39B-AS1 MIR6834 ATF6B LOC100287329 LSM2 B3GALT4 HLA-DMA BRD2 TAP1 C6orf47 MIR6721 LY6G6F LOC100294145 RING1 SNORD117 NOTCH4 LY6G6E HLA-DRB6 SLC39A7 LY6G5B MIR5004 AGPAT1 ZBTB12 WDR46 LOC102725068 HCG23 PPP1R2P1 HCG26 ATP6V1G2 HLA-DPB1 C6orf25 MSH5-SAPCD1 CLIC1 COL11A2 MIR4646 SNORA38 LY6G5C SNORD48 HSPA1A MIR6832 AGER APOM BAG6 LTB HLA-DOB CYP21A1P SNORD84 ZBTB22 BTNL2 C4A CUTA MIR219A1 MIR1236 NEU1 SNORD52 HCG24 HSPA1L HLA-DRB5 GPANK1 SLC44A4 DXO HLA-DQA1 PHF1 TAPBP HLA-DRB1 RPS18 MIR6833 PSMB8 STK19 PFDN6 TNF KIFC1 PPT2 SKIV2L AIF1 ABHD16A SYNGAP1 NFKBIL1 LY6G6C TAP2 PSMB9 ATP6V1G2-DDX39B HLA-DPA1 HLA-DPB2 C2 VARS GPSM3 CYP21A2 VWA7 SAPCD1-AS1 C6orf10 C2-AS1 CFB NELFE DDX39B RGL2 NCR3 PPT2-EGFL8 HLA-DRA HSD17B8 FKBPL MCCD1 MIR6873 VPS52 HLA-DQB1 DDAH2
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss SNORD48 HSPA1A MIR6832 AGER RNF5 APOM BAG6 LTB TNXA C4B CYP21A1P SAPCD1 PRRC2A SNORD84 PBX2 BTNL2 C4A MIR1236 PRRT1 MSH5 CSNK2B HCP5 LOC100507547 NEU1 SNORD52 MICA MICB C6orf48 LST1 HSPA1L GPANK1 SLC44A4 MIR6891 EHMT2 DXO LTA TNXB LY6G6D MIR6833 STK19 HLA-B EGFL8 TNF LOC101929163 PPT2 HSPA1B SKIV2L AIF1 ABHD16A DDX39B-AS1 ATF6B LOC100287329 LSM2 NFKBIL1 LY6G6C ATP6V1G2-DDX39B C2 VARS C6orf47 GPSM3 MIR6721 CYP21A2 LY6G6F VWA7 SAPCD1-AS1 C6orf10 C2-AS1 CFB SNORD117 NOTCH4 LY6G6E NELFE LY6G5B DDX39B AGPAT1 ZBTB12 NCR3 PPT2-EGFL8 HLA-DRA LOC102725068 FKBPL HCG23 HCG26 ATP6V1G2 C6orf25 MCCD1 MSH5-SAPCD1 CLIC1 MIR4646 DDAH2 SNORA38 LY6G5C

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