Genomic Map
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Target Gene Details
Entrez Gene ID: | 3978 |
Gene Name: | DNA ligase 1 |
Gene Aliases: |
- |
Location: |
Chr.19:48115445-48170603 on Build GRCh38 |
Assay Gene Location: | Within Exon 14 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| LIG1 | NM_000234.2 | 13 | 1588 | NP_000225.1 |
| NM_001289063.1 | 12 | 1495 | NP_001275992.1 | |
| NM_001289064.1 | 11 | 1384 | NP_001275993.1 | |
| NM_001320970.1 | 13 | 1585 | NP_001307899.1 | |
| NM_001320971.1 | 12 | 1498 | NP_001307900.1 | |
| NR_110296.1 | 13 | 1585 | ||
| NR_135497.1 | 13 | 1588 | ||
| NR_135498.1 | 12 | 1503 | ||
| NR_135499.1 | 12 | 1498 | ||
| NR_135500.1 | 13 | 1765 | ||
| NR_135501.1 | 12 | 1495 | ||
| XM_017026809.1 | 11 | 1117 | XP_016882298.1 | |
| AB208791.1 | 13 | 1308 | BAD92028.1 | |
| AK225863.1 | ||||
| AK297296.1 | 11 | 1095 | ||
| AK300370.1 | 12 | 1236 | ||
| AK300607.1 | 8 | 924 | ||
| AK303644.1 | 12 | 1282 | ||
| AK314210.1 | 13 | 1295 | ||
| BC108318.1 | 13 | 1588 | AAI08319.1 | |
| BC110622.2 | 12 | 1237 | AAI10623.1 | |
| M36067.1 | 13 | 1288 | AAA59518.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv833853 | Chr.19:47982539 - 48184317 on Build GRCh38 | Loss |
 ELSPBP1
PLA2G4C
PLA2G4C-AS1
BSPH1
CABP5
C19orf68
LIG1
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
FLJ26850
SPACA4
FTL
BSPH1
HRC
DKKL1
PIH1D1
CGB5
SNAR-A8
SNORD32A
LHB
SNAR-A6
SNAR-A3
SNAR-B1
SNAR-A10
CPT1C
NTF4
TBC1D17
SEC1P
ELSPBP1
CA11
C19orf73
FLT3LG
SNAR-C4
SNAR-A13
PRRG2
NTN5
C19orf68
SYNGR4
MIR6798
SNORD34
AKT1S1
SNAR-C3
MIR4749
BAX
TULP2
LOC101928295
PTH2
IRF3
KCNJ14
AP2A1
RPL13A
PPFIA3
SULT2B1
HSD17B14
SNAR-C5
MIR6799
MIR4751
LOC101059948
SNAR-A5
SNAR-A9
SNAR-G1
SPHK2
ALDH16A1
CGB7
PTOV1-AS2
PRMT1
ATF5
KCNA7
CD37
PLA2G4C
CGB8
SIGLEC11
BCL2L12
CGB3
SCAF1
NUCB1
SLC17A7
VRK3
RRAS
PRR12
MAMSTR
ZNF114
BCAT2
CGB1
NUCB1-AS1
NUP62
SNORD33
LMTK3
FGF21
LOC100287477
FAM83E
PNKP
SLC6A16
RPL18
MIR5088
SNAR-A11
TEAD2
GRIN2D
SNORD35B
RUVBL2
IL4I1
CCDC114
LOC105372430
SNORD35A
NOSIP
FUT1
CGB2
MIR4750
GFY
MED25
SNAR-A1
FUT2
IZUMO1
TRPM4
FUZ
PLEKHA4
TMEM143
LIG1
ADM5
TSKS
RCN3
MIR4324
GRWD1
SNAR-A2
PLA2G4C-AS1
KDELR1
RASIP1
MIR6800
SNAR-C1
EMP3
RPS11
PPP1R15A
CCDC155
SNAR-C2
CYTH2
SNAR-G2
SNAR-A4
CABP5
SNAR-D
MIR150
ZNF473
SIGLEC16
LIN7B
DHDH
SNAR-A12
GYS1
DBP
PTOV1-AS1
SNRNP70
SNAR-A7
SNAR-A14
FCGRT
PTOV1
CARD8-AS1
CARD8
LOC105447645
SNAR-B2
|
| esv34181 | Chr.19:48009377 - 48416682 on Build GRCh38 | Loss |
ELSPBP1
ZNF114
CCDC114
PLA2G4C-AS1
KDELR1
C19orf68
SYNGR4
PLA2G4C
EMP3
CABP5
GRIN2D
CARD8-AS1
CARD8
TMEM143
LIG1
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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