Hs01959538_cn

• Gene Symbol: CLCF1
• Assay Reference Genome Location: Chr.11:67365042 on build GRCh38
• Cytoband: 11q13.2

Target Gene Details

• Entrez Gene ID: 23529
• Gene Name: cardiotrophin-like cytokine factor 1
• Gene Aliases: BSF-3, BSF3, CISS2, CLC, NNT-1, NNT1, NR6
• Location: Chr.11:67364168-67374177 on Build GRCh38
• Assay Gene Location: Within Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CLCF1	NM_001166212.1	3	887	NP_001159684.1
	NM_013246.2	3	968	NP_037378.1
	AF172854.1	3	817	AAD54284.1
	AF176911.1			AAF00991.1
	AK298052.1	3	887
	BC012939.1	3	844	AAH12939.1
	BC066229.1			AAH66229.1
	BC066230.1			AAH66230.1
	BC066231.1			AAH66231.1

Target Gene Details

• Entrez Gene ID: 100130987
• Gene Name: uncharacterized LOC100130987
• Gene Aliases: -
• Location: Chr.11:67317839-67391687 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC100130987	NR_024469.1
	AK096155.1
	DA400240.1
	DB058546.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv468603	Chr.11:67265605 - 67397024 on Build GRCh38	Loss	CLCF1 POLD4 SSH3 LOC100130987 RAD9A ANKRD13D GRK2
dgv52n111	Chr.11:67362651 - 67521123 on Build GRCh38	Deletion	RPS6KB2 LOC100130987 CABP4 RAD9A CABP2 PITPNM1 PTPRCAP AIP PPP1CA CDK2AP2 GPR152 CLCF1 MIR6752 TMEM134 CARNS1 TBC1D10C CORO1B

More Information

Additional Information:

For this assay, SNP(s) [rs116002422] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

positive regulation of immunoglobulin production
cell surface receptor signaling pathway
JAK-STAT cascade
positive regulation of cell proliferation
cytokine-mediated signaling pathway
B cell differentiation
positive regulation of B cell proliferation
positive regulation of tyrosine phosphorylation of Stat3 protein
negative regulation of neuron apoptotic process
positive regulation of isotype switching to IgE isotypes
positive regulation of astrocyte differentiation

Function(s)

receptor binding
cytokine activity
ciliary neurotrophic factor receptor binding
protein binding
growth factor activity
protein heterodimerization activity